Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2141 and GFF2142 are separated by 11 nucleotides GFF2142 and GFF2143 are separated by 136 nucleotides GFF2143 and GFF2144 are separated by 361 nucleotides
GFF2141 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 830,216 to 830,968
GFF2141
GFF2142 - Ureidoglycolate lyase, at 830,980 to 831,822
GFF2142
GFF2143 - HTH-type transcriptional regulator GbpR, at 831,959 to 832,984
GFF2143
GFF2144 - Nitrilase, at 833,346 to 834,278
GFF2144
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1 at 831.057 kb on - strand at 831.057 kb on - strand at 831.057 kb on - strand at 831.146 kb on + strand, within GFF2142 at 831.146 kb on + strand, within GFF2142 at 831.146 kb on + strand, within GFF2142 at 831.147 kb on - strand, within GFF2142 at 831.147 kb on - strand, within GFF2142 at 831.147 kb on - strand, within GFF2142 at 831.374 kb on + strand, within GFF2142 at 831.413 kb on + strand, within GFF2142 at 831.413 kb on + strand, within GFF2142 at 831.413 kb on + strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.584 kb on + strand, within GFF2142 at 831.585 kb on - strand, within GFF2142 at 831.585 kb on - strand, within GFF2142 at 831.726 kb on + strand, within GFF2142 at 831.939 kb on + strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.952 kb on + strand at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.806 kb on - strand, within GFF2143 at 832.875 kb on + strand, within GFF2143 at 833.002 kb on + strand at 833.002 kb on + strand at 833.002 kb on + strand at 833.003 kb on - strand at 833.003 kb on - strand at 833.003 kb on - strand at 833.003 kb on - strand at 833.067 kb on - strand at 833.197 kb on + strand at 833.198 kb on - strand at 833.217 kb on + strand at 833.217 kb on + strand at 833.217 kb on + strand at 833.218 kb on - strand at 833.218 kb on - strand at 833.347 kb on + strand at 833.423 kb on - strand at 833.460 kb on - strand, within GFF2144 at 833.602 kb on + strand, within GFF2144 at 833.602 kb on + strand, within GFF2144 at 833.602 kb on + strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.603 kb on - strand, within GFF2144 at 833.749 kb on + strand, within GFF2144 at 833.750 kb on - strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.752 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.776 kb on + strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.777 kb on - strand, within GFF2144 at 833.926 kb on + strand, within GFF2144 at 833.927 kb on - strand, within GFF2144
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 831,057 - -1.2 831,057 - +0.4 831,057 - -0.7 831,146 + GFF2142 0.20 -0.2 831,146 + GFF2142 0.20 -0.4 831,146 + GFF2142 0.20 -0.0 831,147 - GFF2142 0.20 +0.5 831,147 - GFF2142 0.20 -0.7 831,147 - GFF2142 0.20 -0.4 831,374 + GFF2142 0.47 -0.9 831,413 + GFF2142 0.51 +0.5 831,413 + GFF2142 0.51 -0.2 831,413 + GFF2142 0.51 -1.0 831,414 - GFF2142 0.51 -0.5 831,414 - GFF2142 0.51 -0.1 831,414 - GFF2142 0.51 -0.7 831,414 - GFF2142 0.51 -0.1 831,414 - GFF2142 0.51 -0.2 831,414 - GFF2142 0.51 -0.2 831,414 - GFF2142 0.51 +0.1 831,414 - GFF2142 0.51 -0.7 831,584 + GFF2142 0.72 +0.7 831,585 - GFF2142 0.72 -0.5 831,585 - GFF2142 0.72 -0.0 831,726 + GFF2142 0.88 +0.8 831,939 + +1.2 831,940 - +0.1 831,940 - -0.5 831,940 - +1.1 831,940 - -1.2 831,940 - +0.6 831,952 + +0.0 832,193 + GFF2143 0.23 +0.3 832,193 + GFF2143 0.23 -1.2 832,193 + GFF2143 0.23 -0.4 832,193 + GFF2143 0.23 +0.0 832,193 + GFF2143 0.23 +0.6 832,193 + GFF2143 0.23 -0.5 832,194 - GFF2143 0.23 +0.8 832,194 - GFF2143 0.23 +0.6 832,194 - GFF2143 0.23 -0.2 832,194 - GFF2143 0.23 -0.4 832,806 - GFF2143 0.83 -0.6 832,875 + GFF2143 0.89 -0.6 833,002 + +0.0 833,002 + +0.5 833,002 + +0.0 833,003 - +1.6 833,003 - -0.7 833,003 - -0.0 833,003 - +0.1 833,067 - -0.3 833,197 + -1.0 833,198 - -0.4 833,217 + -0.6 833,217 + -1.4 833,217 + +0.5 833,218 - -0.7 833,218 - +0.4 833,347 + -0.6 833,423 - +0.2 833,460 - GFF2144 0.12 -0.8 833,602 + GFF2144 0.27 -0.3 833,602 + GFF2144 0.27 -0.7 833,602 + GFF2144 0.27 -0.0 833,603 - GFF2144 0.28 -0.2 833,603 - GFF2144 0.28 -0.2 833,603 - GFF2144 0.28 -0.2 833,603 - GFF2144 0.28 +0.0 833,603 - GFF2144 0.28 -0.5 833,603 - GFF2144 0.28 +0.4 833,749 + GFF2144 0.43 -2.3 833,750 - GFF2144 0.43 +1.0 833,752 + GFF2144 0.44 +1.2 833,752 + GFF2144 0.44 -0.8 833,752 + GFF2144 0.44 -0.6 833,752 + GFF2144 0.44 -0.6 833,752 + GFF2144 0.44 +0.2 833,776 + GFF2144 0.46 -0.4 833,776 + GFF2144 0.46 -0.0 833,776 + GFF2144 0.46 -0.8 833,776 + GFF2144 0.46 -1.2 833,776 + GFF2144 0.46 +0.5 833,776 + GFF2144 0.46 -0.3 833,776 + GFF2144 0.46 -0.2 833,776 + GFF2144 0.46 -0.3 833,776 + GFF2144 0.46 +0.0 833,776 + GFF2144 0.46 -0.4 833,776 + GFF2144 0.46 -1.7 833,776 + GFF2144 0.46 +0.4 833,776 + GFF2144 0.46 -0.1 833,777 - GFF2144 0.46 +0.2 833,777 - GFF2144 0.46 -0.3 833,777 - GFF2144 0.46 -1.0 833,777 - GFF2144 0.46 -1.2 833,777 - GFF2144 0.46 +0.1 833,777 - GFF2144 0.46 -0.1 833,777 - GFF2144 0.46 +0.0 833,777 - GFF2144 0.46 +0.4 833,926 + GFF2144 0.62 +0.9 833,927 - GFF2144 0.62 -1.4
Or see this region's nucleotide sequence