Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2111 and GFF2112 are separated by 150 nucleotides GFF2112 and GFF2113 are separated by 322 nucleotides GFF2113 and GFF2114 are separated by 23 nucleotides
GFF2111 - hypothetical protein, at 797,701 to 799,365
GFF2111
GFF2112 - hypothetical protein, at 799,516 to 799,722
GFF2112
GFF2113 - hypothetical protein, at 800,045 to 800,539
GFF2113
GFF2114 - hypothetical protein, at 800,563 to 801,534
GFF2114
Position (kb) 799
800 Strain fitness (log2 ratio) -2
-1
0
1 at 798.516 kb on + strand, within GFF2111 at 798.527 kb on - strand, within GFF2111 at 798.627 kb on + strand, within GFF2111 at 798.627 kb on + strand, within GFF2111 at 798.627 kb on + strand, within GFF2111 at 798.627 kb on + strand, within GFF2111 at 798.628 kb on - strand, within GFF2111 at 798.628 kb on - strand, within GFF2111 at 798.628 kb on - strand, within GFF2111 at 799.258 kb on + strand at 799.299 kb on + strand at 799.299 kb on + strand at 799.299 kb on + strand at 799.299 kb on + strand at 799.299 kb on + strand at 799.299 kb on + strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.300 kb on - strand at 799.410 kb on - strand at 799.413 kb on + strand at 799.440 kb on + strand at 799.441 kb on - strand at 799.441 kb on - strand at 799.441 kb on - strand at 799.616 kb on - strand, within GFF2112 at 799.686 kb on + strand, within GFF2112 at 799.686 kb on + strand, within GFF2112 at 799.720 kb on + strand at 799.720 kb on + strand at 799.720 kb on + strand at 799.720 kb on + strand at 799.721 kb on - strand at 799.721 kb on - strand at 799.721 kb on - strand at 799.721 kb on - strand at 799.726 kb on + strand at 799.727 kb on - strand at 799.762 kb on - strand at 799.762 kb on - strand at 799.903 kb on + strand at 799.904 kb on - strand at 800.238 kb on + strand, within GFF2113 at 800.238 kb on + strand, within GFF2113 at 800.238 kb on + strand, within GFF2113 at 800.239 kb on - strand, within GFF2113 at 800.239 kb on - strand, within GFF2113 at 800.239 kb on - strand, within GFF2113 at 800.239 kb on - strand, within GFF2113 at 800.250 kb on + strand, within GFF2113 at 800.250 kb on + strand, within GFF2113 at 800.251 kb on - strand, within GFF2113 at 800.415 kb on + strand, within GFF2113 at 800.415 kb on + strand, within GFF2113 at 800.416 kb on - strand, within GFF2113 at 800.417 kb on + strand, within GFF2113 at 800.417 kb on + strand, within GFF2113 at 800.417 kb on + strand, within GFF2113 at 800.418 kb on - strand, within GFF2113 at 800.418 kb on - strand, within GFF2113 at 800.418 kb on - strand, within GFF2113 at 800.492 kb on + strand at 800.492 kb on + strand at 800.493 kb on - strand at 800.493 kb on - strand at 800.585 kb on + strand at 800.585 kb on + strand at 800.586 kb on - strand at 800.586 kb on - strand at 800.611 kb on + strand at 800.611 kb on + strand at 800.702 kb on + strand, within GFF2114 at 800.702 kb on + strand, within GFF2114 at 800.703 kb on - strand, within GFF2114 at 800.703 kb on - strand, within GFF2114
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 798,516 + GFF2111 0.49 -0.2 798,527 - GFF2111 0.50 +0.4 798,627 + GFF2111 0.56 +0.3 798,627 + GFF2111 0.56 -0.1 798,627 + GFF2111 0.56 -1.2 798,627 + GFF2111 0.56 -1.3 798,628 - GFF2111 0.56 +1.0 798,628 - GFF2111 0.56 -0.7 798,628 - GFF2111 0.56 +0.3 799,258 + +0.7 799,299 + -0.8 799,299 + -0.5 799,299 + -0.8 799,299 + -0.1 799,299 + -1.5 799,299 + +0.5 799,300 - -0.7 799,300 - -1.1 799,300 - +1.3 799,300 - -0.2 799,300 - -0.6 799,300 - +0.6 799,300 - -1.5 799,300 - +1.2 799,300 - +0.6 799,300 - +0.5 799,300 - -1.2 799,410 - -0.3 799,413 + -0.4 799,440 + +0.8 799,441 - -0.6 799,441 - -0.5 799,441 - -0.4 799,616 - GFF2112 0.48 -0.6 799,686 + GFF2112 0.82 +0.3 799,686 + GFF2112 0.82 -0.7 799,720 + -0.3 799,720 + +0.1 799,720 + +0.9 799,720 + -0.1 799,721 - -0.3 799,721 - +0.3 799,721 - -0.4 799,721 - +0.3 799,726 + +1.2 799,727 - -0.2 799,762 - +1.6 799,762 - +0.3 799,903 + -0.5 799,904 - +0.5 800,238 + GFF2113 0.39 +0.3 800,238 + GFF2113 0.39 +1.3 800,238 + GFF2113 0.39 +0.1 800,239 - GFF2113 0.39 -1.2 800,239 - GFF2113 0.39 -0.3 800,239 - GFF2113 0.39 +0.3 800,239 - GFF2113 0.39 -0.3 800,250 + GFF2113 0.41 -0.1 800,250 + GFF2113 0.41 +0.1 800,251 - GFF2113 0.42 -0.4 800,415 + GFF2113 0.75 -0.1 800,415 + GFF2113 0.75 -1.5 800,416 - GFF2113 0.75 +0.1 800,417 + GFF2113 0.75 -0.2 800,417 + GFF2113 0.75 +0.4 800,417 + GFF2113 0.75 +0.1 800,418 - GFF2113 0.75 +0.9 800,418 - GFF2113 0.75 +0.5 800,418 - GFF2113 0.75 +0.9 800,492 + +0.1 800,492 + -0.3 800,493 - -0.6 800,493 - +0.2 800,585 + +0.0 800,585 + +1.4 800,586 - -0.5 800,586 - +0.5 800,611 + +0.1 800,611 + +0.0 800,702 + GFF2114 0.14 +0.8 800,702 + GFF2114 0.14 +0.6 800,703 - GFF2114 0.14 +0.4 800,703 - GFF2114 0.14 -1.9
Or see this region's nucleotide sequence