Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2103 and GFF2104 are separated by 9 nucleotides GFF2104 and GFF2105 are separated by 78 nucleotides
GFF2103 - Cobalt-zinc-cadmium resistance protein CzcA, at 787,781 to 790,912
GFF2103
GFF2104 - hypothetical protein, at 790,922 to 792,565
GFF2104
GFF2105 - Adaptive-response sensory-kinase SasA, at 792,644 to 793,966
GFF2105
Position (kb) 790
791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.088 kb on - strand, within GFF2103 at 790.088 kb on - strand, within GFF2103 at 790.122 kb on + strand, within GFF2103 at 790.123 kb on - strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.152 kb on - strand, within GFF2103 at 790.152 kb on - strand, within GFF2103 at 790.324 kb on - strand, within GFF2103 at 790.519 kb on + strand, within GFF2103 at 790.538 kb on + strand, within GFF2103 at 790.538 kb on + strand, within GFF2103 at 790.538 kb on + strand, within GFF2103 at 790.539 kb on - strand, within GFF2103 at 790.539 kb on - strand, within GFF2103 at 790.539 kb on - strand, within GFF2103 at 790.633 kb on - strand at 790.633 kb on - strand at 790.827 kb on + strand at 790.828 kb on - strand at 791.068 kb on - strand at 791.664 kb on + strand, within GFF2104 at 791.664 kb on + strand, within GFF2104 at 791.664 kb on + strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 792.140 kb on + strand, within GFF2104 at 792.255 kb on + strand, within GFF2104 at 792.255 kb on + strand, within GFF2104 at 792.255 kb on + strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.256 kb on - strand, within GFF2104 at 792.357 kb on + strand, within GFF2104 at 792.594 kb on + strand at 792.642 kb on + strand at 792.642 kb on + strand at 792.643 kb on - strand at 792.643 kb on - strand at 792.930 kb on + strand, within GFF2105 at 792.930 kb on + strand, within GFF2105 at 792.930 kb on + strand, within GFF2105 at 792.931 kb on - strand, within GFF2105 at 793.123 kb on - strand, within GFF2105 at 793.123 kb on - strand, within GFF2105 at 793.139 kb on + strand, within GFF2105 at 793.139 kb on + strand, within GFF2105 at 793.484 kb on - strand, within GFF2105
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 790,088 - GFF2103 0.74 +0.4 790,088 - GFF2103 0.74 +0.4 790,122 + GFF2103 0.75 -0.9 790,123 - GFF2103 0.75 -0.0 790,151 + GFF2103 0.76 -0.5 790,151 + GFF2103 0.76 -0.6 790,151 + GFF2103 0.76 +0.1 790,151 + GFF2103 0.76 +0.2 790,151 + GFF2103 0.76 +0.1 790,152 - GFF2103 0.76 +1.4 790,152 - GFF2103 0.76 -0.7 790,324 - GFF2103 0.81 +0.1 790,519 + GFF2103 0.87 +0.2 790,538 + GFF2103 0.88 +0.7 790,538 + GFF2103 0.88 -0.5 790,538 + GFF2103 0.88 -0.4 790,539 - GFF2103 0.88 +0.7 790,539 - GFF2103 0.88 -0.3 790,539 - GFF2103 0.88 +0.1 790,633 - -0.9 790,633 - +0.1 790,827 + +0.8 790,828 - +0.9 791,068 - +0.3 791,664 + GFF2104 0.45 +0.2 791,664 + GFF2104 0.45 +0.6 791,664 + GFF2104 0.45 -0.3 791,665 - GFF2104 0.45 +0.2 791,665 - GFF2104 0.45 -2.8 791,665 - GFF2104 0.45 -0.6 791,665 - GFF2104 0.45 -0.0 791,665 - GFF2104 0.45 +0.3 792,140 + GFF2104 0.74 -1.9 792,255 + GFF2104 0.81 -1.2 792,255 + GFF2104 0.81 -0.4 792,255 + GFF2104 0.81 -0.6 792,256 - GFF2104 0.81 +0.5 792,256 - GFF2104 0.81 -0.2 792,256 - GFF2104 0.81 -0.4 792,256 - GFF2104 0.81 -0.4 792,357 + GFF2104 0.87 -0.0 792,594 + +0.8 792,642 + +0.3 792,642 + -0.1 792,643 - -1.8 792,643 - -0.8 792,930 + GFF2105 0.22 +0.5 792,930 + GFF2105 0.22 -0.1 792,930 + GFF2105 0.22 +2.1 792,931 - GFF2105 0.22 +0.8 793,123 - GFF2105 0.36 +0.6 793,123 - GFF2105 0.36 +0.1 793,139 + GFF2105 0.37 +0.6 793,139 + GFF2105 0.37 -0.6 793,484 - GFF2105 0.63 +0.4
Or see this region's nucleotide sequence