Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2101 and GFF2102 are separated by 58 nucleotides GFF2102 and GFF2103 are separated by 11 nucleotides GFF2103 and GFF2104 are separated by 9 nucleotides
GFF2101 - Multicopper oxidase MmcO, at 785,879 to 787,336
GFF2101
GFF2102 - hypothetical protein, at 787,395 to 787,769
GFF2102
GFF2103 - Cobalt-zinc-cadmium resistance protein CzcA, at 787,781 to 790,912
GFF2103
GFF2104 - hypothetical protein, at 790,922 to 792,565
GFF2104
Position (kb) 787
788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 787.606 kb on + strand, within GFF2102 at 787.606 kb on + strand, within GFF2102 at 787.607 kb on - strand, within GFF2102 at 787.866 kb on + strand at 787.866 kb on + strand at 788.283 kb on + strand, within GFF2103 at 788.293 kb on - strand, within GFF2103 at 788.293 kb on - strand, within GFF2103 at 788.344 kb on + strand, within GFF2103 at 788.344 kb on + strand, within GFF2103 at 788.345 kb on - strand, within GFF2103 at 788.742 kb on + strand, within GFF2103 at 788.742 kb on + strand, within GFF2103 at 788.743 kb on - strand, within GFF2103 at 788.761 kb on - strand, within GFF2103 at 788.765 kb on + strand, within GFF2103 at 788.765 kb on + strand, within GFF2103 at 788.766 kb on - strand, within GFF2103 at 788.837 kb on + strand, within GFF2103 at 788.838 kb on - strand, within GFF2103 at 789.004 kb on + strand, within GFF2103 at 789.321 kb on - strand, within GFF2103 at 789.429 kb on + strand, within GFF2103 at 789.491 kb on - strand, within GFF2103 at 790.088 kb on - strand, within GFF2103 at 790.088 kb on - strand, within GFF2103 at 790.122 kb on + strand, within GFF2103 at 790.123 kb on - strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.151 kb on + strand, within GFF2103 at 790.152 kb on - strand, within GFF2103 at 790.152 kb on - strand, within GFF2103 at 790.324 kb on - strand, within GFF2103 at 790.519 kb on + strand, within GFF2103 at 790.538 kb on + strand, within GFF2103 at 790.538 kb on + strand, within GFF2103 at 790.538 kb on + strand, within GFF2103 at 790.539 kb on - strand, within GFF2103 at 790.539 kb on - strand, within GFF2103 at 790.539 kb on - strand, within GFF2103 at 790.633 kb on - strand at 790.633 kb on - strand at 790.827 kb on + strand at 790.828 kb on - strand at 791.068 kb on - strand at 791.664 kb on + strand, within GFF2104 at 791.664 kb on + strand, within GFF2104 at 791.664 kb on + strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104 at 791.665 kb on - strand, within GFF2104
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 787,606 + GFF2102 0.56 -0.2 787,606 + GFF2102 0.56 +1.0 787,607 - GFF2102 0.57 -0.9 787,866 + +0.4 787,866 + +0.9 788,283 + GFF2103 0.16 -0.7 788,293 - GFF2103 0.16 +0.5 788,293 - GFF2103 0.16 -0.9 788,344 + GFF2103 0.18 +0.1 788,344 + GFF2103 0.18 +0.5 788,345 - GFF2103 0.18 +1.6 788,742 + GFF2103 0.31 -0.6 788,742 + GFF2103 0.31 +0.2 788,743 - GFF2103 0.31 +0.6 788,761 - GFF2103 0.31 -1.7 788,765 + GFF2103 0.31 -0.3 788,765 + GFF2103 0.31 +0.6 788,766 - GFF2103 0.31 +0.2 788,837 + GFF2103 0.34 -0.7 788,838 - GFF2103 0.34 -0.3 789,004 + GFF2103 0.39 -0.0 789,321 - GFF2103 0.49 +0.3 789,429 + GFF2103 0.53 -0.1 789,491 - GFF2103 0.55 +1.1 790,088 - GFF2103 0.74 +0.4 790,088 - GFF2103 0.74 +0.4 790,122 + GFF2103 0.75 -0.9 790,123 - GFF2103 0.75 -0.0 790,151 + GFF2103 0.76 -0.5 790,151 + GFF2103 0.76 -0.6 790,151 + GFF2103 0.76 +0.1 790,151 + GFF2103 0.76 +0.2 790,151 + GFF2103 0.76 +0.1 790,152 - GFF2103 0.76 +1.4 790,152 - GFF2103 0.76 -0.7 790,324 - GFF2103 0.81 +0.1 790,519 + GFF2103 0.87 +0.2 790,538 + GFF2103 0.88 +0.7 790,538 + GFF2103 0.88 -0.5 790,538 + GFF2103 0.88 -0.4 790,539 - GFF2103 0.88 +0.7 790,539 - GFF2103 0.88 -0.3 790,539 - GFF2103 0.88 +0.1 790,633 - -0.9 790,633 - +0.1 790,827 + +0.8 790,828 - +0.9 791,068 - +0.3 791,664 + GFF2104 0.45 +0.2 791,664 + GFF2104 0.45 +0.6 791,664 + GFF2104 0.45 -0.3 791,665 - GFF2104 0.45 +0.2 791,665 - GFF2104 0.45 -2.8 791,665 - GFF2104 0.45 -0.6 791,665 - GFF2104 0.45 -0.0 791,665 - GFF2104 0.45 +0.3
Or see this region's nucleotide sequence