Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2092 and GFF2093 are separated by 150 nucleotides GFF2093 and GFF2094 overlap by 40 nucleotides GFF2094 and GFF2095 are separated by 245 nucleotides GFF2095 and GFF2096 are separated by 129 nucleotides GFF2096 and GFF2097 are separated by 53 nucleotides
GFF2092 - hypothetical protein, at 777,527 to 777,826
GFF2092
GFF2093 - hypothetical protein, at 777,977 to 778,396
GFF2093
GFF2094 - hypothetical protein, at 778,357 to 779,046
GFF2094
GFF2095 - Biofilm growth-associated repressor, at 779,292 to 779,585
GFF2095
GFF2096 - hypothetical protein, at 779,715 to 779,918
GFF2096
GFF2097 - Multidrug resistance protein MdtA, at 779,972 to 781,000
GFF2097
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 777.430 kb on + strand at 777.676 kb on - strand, within GFF2092 at 777.676 kb on - strand, within GFF2092 at 777.819 kb on + strand at 777.820 kb on - strand at 777.878 kb on - strand at 777.992 kb on + strand at 778.130 kb on + strand, within GFF2093 at 778.131 kb on - strand, within GFF2093 at 778.187 kb on + strand, within GFF2093 at 778.695 kb on + strand, within GFF2094 at 778.695 kb on + strand, within GFF2094 at 778.695 kb on + strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.939 kb on + strand, within GFF2094 at 778.939 kb on + strand, within GFF2094 at 778.939 kb on + strand, within GFF2094 at 778.940 kb on - strand, within GFF2094 at 778.940 kb on - strand, within GFF2094 at 779.045 kb on - strand at 779.045 kb on - strand at 779.045 kb on - strand at 779.045 kb on - strand at 779.064 kb on - strand at 779.585 kb on + strand at 779.586 kb on - strand at 779.713 kb on + strand at 779.714 kb on - strand at 779.714 kb on - strand at 779.714 kb on - strand at 779.784 kb on - strand, within GFF2096 at 779.789 kb on - strand, within GFF2096 at 779.797 kb on - strand, within GFF2096 at 779.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 777,430 + +0.4 777,676 - GFF2092 0.50 +0.7 777,676 - GFF2092 0.50 -2.0 777,819 + -1.0 777,820 - +0.6 777,878 - +0.3 777,992 + +0.0 778,130 + GFF2093 0.36 +0.6 778,131 - GFF2093 0.37 -0.4 778,187 + GFF2093 0.50 +0.9 778,695 + GFF2094 0.49 -0.4 778,695 + GFF2094 0.49 +0.5 778,695 + GFF2094 0.49 +0.1 778,696 - GFF2094 0.49 +0.6 778,696 - GFF2094 0.49 +0.6 778,696 - GFF2094 0.49 -0.4 778,696 - GFF2094 0.49 +0.5 778,939 + GFF2094 0.84 -0.4 778,939 + GFF2094 0.84 -1.4 778,939 + GFF2094 0.84 +0.2 778,940 - GFF2094 0.84 -1.3 778,940 - GFF2094 0.84 -0.0 779,045 - -0.4 779,045 - -0.6 779,045 - -0.1 779,045 - -2.1 779,064 - -0.3 779,585 + +0.3 779,586 - -1.5 779,713 + +1.5 779,714 - -0.2 779,714 - -0.7 779,714 - +0.3 779,784 - GFF2096 0.34 +0.6 779,789 - GFF2096 0.36 +0.8 779,797 - GFF2096 0.40 -0.7 779,932 - +1.0
Or see this region's nucleotide sequence