Strain Fitness in Xanthobacter sp. DMC5 around GFF2085

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2084 and GFF2085 are separated by 408 nucleotidesGFF2085 and GFF2086 overlap by 4 nucleotides GFF2084 - Elongation factor 4, at 766,769 to 768,574 GFF2084 GFF2085 - hypothetical protein, at 768,983 to 770,761 GFF2085 GFF2086 - hypothetical protein, at 770,758 to 772,284 GFF2086 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -2 -1 0 1at 768.625 kb on - strandat 769.317 kb on - strand, within GFF2085at 769.390 kb on - strand, within GFF2085

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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768,625 - -0.3
769,317 - GFF2085 0.19 -1.8
769,390 - GFF2085 0.23 +0.5

Or see this region's nucleotide sequence