Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2038 and GFF2039 are separated by 658 nucleotides GFF2039 and GFF2040 are separated by 135 nucleotides
GFF2038 - hypothetical protein, at 711,693 to 712,664
GFF2038
GFF2039 - putative enoyl-CoA hydratase echA8, at 713,323 to 714,093
GFF2039
GFF2040 - Formamidopyrimidine-DNA glycosylase, at 714,229 to 715,107
GFF2040
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 712.359 kb on + strand, within GFF2038 at 712.359 kb on + strand, within GFF2038 at 712.360 kb on - strand, within GFF2038 at 712.662 kb on + strand at 712.662 kb on + strand at 712.662 kb on + strand at 712.663 kb on - strand at 713.076 kb on + strand at 713.450 kb on + strand, within GFF2039 at 713.450 kb on + strand, within GFF2039 at 713.846 kb on + strand, within GFF2039 at 713.846 kb on + strand, within GFF2039 at 713.847 kb on - strand, within GFF2039 at 713.847 kb on - strand, within GFF2039 at 713.858 kb on + strand, within GFF2039 at 713.859 kb on - strand, within GFF2039 at 713.870 kb on + strand, within GFF2039 at 714.086 kb on + strand at 714.087 kb on - strand at 714.098 kb on - strand at 714.098 kb on - strand at 714.169 kb on + strand at 714.169 kb on + strand at 714.170 kb on - strand at 714.230 kb on + strand at 714.230 kb on + strand at 714.251 kb on + strand at 714.251 kb on + strand at 714.252 kb on - strand at 714.252 kb on - strand at 714.252 kb on - strand at 714.252 kb on - strand at 714.252 kb on - strand at 714.335 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.551 kb on + strand, within GFF2040 at 714.552 kb on - strand, within GFF2040 at 714.552 kb on - strand, within GFF2040 at 714.552 kb on - strand, within GFF2040 at 714.552 kb on - strand, within GFF2040 at 714.552 kb on - strand, within GFF2040 at 714.639 kb on - strand, within GFF2040 at 714.713 kb on + strand, within GFF2040 at 714.713 kb on + strand, within GFF2040 at 714.714 kb on - strand, within GFF2040 at 714.932 kb on + strand, within GFF2040 at 714.932 kb on + strand, within GFF2040 at 714.933 kb on - strand, within GFF2040
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 712,359 + GFF2038 0.69 -1.0 712,359 + GFF2038 0.69 -0.5 712,360 - GFF2038 0.69 +0.2 712,662 + -0.2 712,662 + +0.4 712,662 + -0.5 712,663 - +0.2 713,076 + -0.4 713,450 + GFF2039 0.16 -1.3 713,450 + GFF2039 0.16 +0.4 713,846 + GFF2039 0.68 -0.4 713,846 + GFF2039 0.68 +1.8 713,847 - GFF2039 0.68 -0.6 713,847 - GFF2039 0.68 +0.6 713,858 + GFF2039 0.69 -1.5 713,859 - GFF2039 0.70 +0.3 713,870 + GFF2039 0.71 +1.4 714,086 + -3.4 714,087 - -1.9 714,098 - +0.5 714,098 - +1.2 714,169 + +0.2 714,169 + +0.2 714,170 - -0.1 714,230 + +1.3 714,230 + -0.4 714,251 + +0.1 714,251 + +0.4 714,252 - +1.4 714,252 - +0.3 714,252 - +0.2 714,252 - +1.8 714,252 - +0.1 714,335 + GFF2040 0.12 +0.5 714,551 + GFF2040 0.37 +1.2 714,551 + GFF2040 0.37 -0.0 714,551 + GFF2040 0.37 +0.3 714,551 + GFF2040 0.37 +0.7 714,551 + GFF2040 0.37 -1.8 714,551 + GFF2040 0.37 -0.4 714,551 + GFF2040 0.37 -0.5 714,551 + GFF2040 0.37 -0.9 714,551 + GFF2040 0.37 +0.6 714,552 - GFF2040 0.37 -0.7 714,552 - GFF2040 0.37 +0.2 714,552 - GFF2040 0.37 +1.4 714,552 - GFF2040 0.37 -1.0 714,552 - GFF2040 0.37 -1.0 714,639 - GFF2040 0.47 -0.3 714,713 + GFF2040 0.55 -0.1 714,713 + GFF2040 0.55 +0.0 714,714 - GFF2040 0.55 -0.4 714,932 + GFF2040 0.80 +0.2 714,932 + GFF2040 0.80 -0.0 714,933 - GFF2040 0.80 -1.4
Or see this region's nucleotide sequence