Strain Fitness in Xanthobacter sp. DMC5 around GFF2033

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2031 and GFF2032 are separated by 97 nucleotidesGFF2032 and GFF2033 are separated by 2 nucleotidesGFF2033 and GFF2034 are separated by 135 nucleotides GFF2031 - hypothetical protein, at 704,941 to 705,294 GFF2031 GFF2032 - hypothetical protein, at 705,392 to 706,186 GFF2032 GFF2033 - hypothetical protein, at 706,189 to 707,061 GFF2033 GFF2034 - hypothetical protein, at 707,197 to 708,234 GFF2034 Position (kb) 706 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 705.201 kb on - strand, within GFF2031at 705.567 kb on + strand, within GFF2032at 705.600 kb on - strand, within GFF2032at 705.825 kb on + strand, within GFF2032at 705.825 kb on + strand, within GFF2032at 705.825 kb on + strand, within GFF2032at 705.826 kb on - strand, within GFF2032at 705.826 kb on - strand, within GFF2032at 705.826 kb on - strand, within GFF2032at 705.933 kb on + strand, within GFF2032at 705.933 kb on + strand, within GFF2032at 706.032 kb on + strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.042 kb on - strand, within GFF2032at 706.304 kb on + strand, within GFF2033at 706.304 kb on + strand, within GFF2033at 706.305 kb on - strand, within GFF2033at 706.305 kb on - strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.380 kb on - strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.536 kb on - strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.692 kb on - strand, within GFF2033at 706.692 kb on - strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.782 kb on - strand, within GFF2033at 706.782 kb on - strand, within GFF2033at 706.862 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 707.198 kb on + strandat 707.198 kb on + strandat 707.198 kb on + strandat 707.198 kb on + strandat 707.198 kb on + strandat 707.379 kb on + strand, within GFF2034at 707.379 kb on + strand, within GFF2034at 707.379 kb on + strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.383 kb on - strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.436 kb on - strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.635 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.840 kb on + strand, within GFF2034at 707.841 kb on - strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.859 kb on - strand, within GFF2034at 707.879 kb on + strand, within GFF2034at 707.891 kb on + strand, within GFF2034

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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705,201 - GFF2031 0.73 -0.4
705,567 + GFF2032 0.22 -0.2
705,600 - GFF2032 0.26 +0.2
705,825 + GFF2032 0.54 -0.1
705,825 + GFF2032 0.54 -0.4
705,825 + GFF2032 0.54 +0.6
705,826 - GFF2032 0.55 +0.1
705,826 - GFF2032 0.55 -0.0
705,826 - GFF2032 0.55 +0.1
705,933 + GFF2032 0.68 -0.2
705,933 + GFF2032 0.68 +1.0
706,032 + GFF2032 0.81 -0.1
706,033 - GFF2032 0.81 -0.3
706,033 - GFF2032 0.81 -0.3
706,033 - GFF2032 0.81 +1.2
706,033 - GFF2032 0.81 -0.6
706,033 - GFF2032 0.81 -1.0
706,042 - GFF2032 0.82 -0.4
706,304 + GFF2033 0.13 -1.8
706,304 + GFF2033 0.13 +0.6
706,305 - GFF2033 0.13 -0.4
706,305 - GFF2033 0.13 +0.3
706,343 + GFF2033 0.18 -0.8
706,343 + GFF2033 0.18 -0.0
706,343 + GFF2033 0.18 -0.2
706,343 + GFF2033 0.18 +0.6
706,344 - GFF2033 0.18 -1.2
706,344 - GFF2033 0.18 +0.9
706,344 - GFF2033 0.18 -0.4
706,344 - GFF2033 0.18 +0.6
706,344 - GFF2033 0.18 -0.1
706,379 + GFF2033 0.22 +0.8
706,379 + GFF2033 0.22 +0.1
706,379 + GFF2033 0.22 -0.8
706,379 + GFF2033 0.22 +0.7
706,379 + GFF2033 0.22 +0.2
706,380 - GFF2033 0.22 -0.0
706,466 + GFF2033 0.32 -0.0
706,466 + GFF2033 0.32 -0.9
706,466 + GFF2033 0.32 -0.7
706,536 - GFF2033 0.40 -1.1
706,691 + GFF2033 0.58 +0.4
706,691 + GFF2033 0.58 +0.2
706,691 + GFF2033 0.58 +1.2
706,692 - GFF2033 0.58 +0.1
706,692 - GFF2033 0.58 +2.0
706,781 + GFF2033 0.68 +0.1
706,781 + GFF2033 0.68 +1.0
706,781 + GFF2033 0.68 +0.1
706,781 + GFF2033 0.68 -0.5
706,781 + GFF2033 0.68 +0.6
706,781 + GFF2033 0.68 +0.4
706,782 - GFF2033 0.68 -0.3
706,782 - GFF2033 0.68 -0.1
706,862 + GFF2033 0.77 -0.6
706,889 + GFF2033 0.80 +2.0
706,889 + GFF2033 0.80 -0.3
706,889 + GFF2033 0.80 +0.3
707,198 + -0.1
707,198 + -0.4
707,198 + +0.5
707,198 + -0.4
707,198 + -0.8
707,379 + GFF2034 0.18 +0.5
707,379 + GFF2034 0.18 -0.2
707,379 + GFF2034 0.18 -3.2
707,380 - GFF2034 0.18 +0.2
707,380 - GFF2034 0.18 -0.1
707,380 - GFF2034 0.18 -0.1
707,380 - GFF2034 0.18 +1.8
707,381 + GFF2034 0.18 -0.2
707,381 + GFF2034 0.18 +0.3
707,381 + GFF2034 0.18 +1.3
707,383 - GFF2034 0.18 +1.6
707,435 + GFF2034 0.23 -0.3
707,435 + GFF2034 0.23 -0.5
707,435 + GFF2034 0.23 -0.3
707,436 - GFF2034 0.23 +0.4
707,634 + GFF2034 0.42 +0.6
707,634 + GFF2034 0.42 +0.3
707,634 + GFF2034 0.42 +0.5
707,635 - GFF2034 0.42 +0.8
707,688 - GFF2034 0.47 -1.0
707,688 - GFF2034 0.47 +0.3
707,688 - GFF2034 0.47 +0.4
707,840 + GFF2034 0.62 +0.4
707,841 - GFF2034 0.62 +0.9
707,858 + GFF2034 0.64 +1.2
707,858 + GFF2034 0.64 -0.0
707,858 + GFF2034 0.64 -1.2
707,859 - GFF2034 0.64 -0.8
707,879 + GFF2034 0.66 -0.1
707,891 + GFF2034 0.67 -0.1

Or see this region's nucleotide sequence