Strain Fitness in Xanthobacter sp. DMC5 around GFF2023

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2020 and GFF2021 are separated by 12 nucleotidesGFF2021 and GFF2022 are separated by 166 nucleotidesGFF2022 and GFF2023 overlap by 1 nucleotidesGFF2023 and GFF2024 overlap by 4 nucleotides GFF2020 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 693,457 to 694,614 GFF2020 GFF2021 - hypothetical protein, at 694,627 to 694,752 GFF2021 GFF2022 - hypothetical protein, at 694,919 to 695,359 GFF2022 GFF2023 - hypothetical protein, at 695,359 to 696,873 GFF2023 GFF2024 - hypothetical protein, at 696,870 to 697,937 GFF2024 Position (kb) 695 696 697Strain fitness (log2 ratio) -1 0 1at 694.534 kb on + strandat 694.535 kb on - strandat 694.535 kb on - strandat 694.535 kb on - strandat 694.549 kb on + strandat 694.550 kb on - strandat 694.609 kb on + strandat 694.610 kb on - strandat 694.633 kb on + strandat 694.634 kb on - strandat 694.634 kb on - strandat 694.634 kb on - strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.751 kb on - strandat 694.751 kb on - strandat 694.880 kb on + strandat 695.114 kb on + strand, within GFF2022at 695.115 kb on - strand, within GFF2022at 695.533 kb on + strand, within GFF2023at 695.626 kb on + strand, within GFF2023at 695.626 kb on + strand, within GFF2023at 695.627 kb on - strand, within GFF2023at 695.627 kb on - strand, within GFF2023at 695.716 kb on + strand, within GFF2023at 695.717 kb on - strand, within GFF2023at 695.717 kb on - strand, within GFF2023at 695.718 kb on + strand, within GFF2023at 695.719 kb on - strand, within GFF2023at 695.719 kb on - strand, within GFF2023at 695.719 kb on - strand, within GFF2023at 696.079 kb on + strand, within GFF2023at 696.080 kb on - strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.349 kb on + strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.418 kb on + strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.568 kb on + strand, within GFF2023at 696.635 kb on - strand, within GFF2023at 696.715 kb on + strand, within GFF2023at 697.017 kb on + strand, within GFF2024at 697.017 kb on + strand, within GFF2024at 697.047 kb on + strand, within GFF2024at 697.062 kb on + strand, within GFF2024at 697.062 kb on + strand, within GFF2024at 697.063 kb on - strand, within GFF2024at 697.063 kb on - strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.148 kb on + strand, within GFF2024at 697.148 kb on + strand, within GFF2024at 697.149 kb on - strand, within GFF2024at 697.149 kb on - strand, within GFF2024at 697.155 kb on + strand, within GFF2024at 697.155 kb on + strand, within GFF2024at 697.156 kb on - strand, within GFF2024at 697.236 kb on + strand, within GFF2024at 697.237 kb on - strand, within GFF2024at 697.237 kb on - strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.435 kb on - strand, within GFF2024at 697.815 kb on + strand, within GFF2024at 697.816 kb on - strand, within GFF2024at 697.872 kb on + strandat 697.872 kb on + strandat 697.872 kb on + strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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694,534 + -1.1
694,535 - +0.4
694,535 - +0.1
694,535 - +0.0
694,549 + -1.0
694,550 - +0.9
694,609 + -0.6
694,610 - -0.0
694,633 + -0.6
694,634 - +0.6
694,634 - +0.3
694,634 - +0.1
694,750 + -0.7
694,750 + -0.2
694,750 + -0.3
694,750 + -0.5
694,750 + +0.3
694,750 + -0.2
694,751 - +0.1
694,751 - -1.0
694,880 + -1.0
695,114 + GFF2022 0.44 +0.0
695,115 - GFF2022 0.44 +0.2
695,533 + GFF2023 0.11 +0.5
695,626 + GFF2023 0.18 -0.2
695,626 + GFF2023 0.18 -0.1
695,627 - GFF2023 0.18 +0.4
695,627 - GFF2023 0.18 -0.5
695,716 + GFF2023 0.24 -0.6
695,717 - GFF2023 0.24 -0.1
695,717 - GFF2023 0.24 -0.1
695,718 + GFF2023 0.24 +0.5
695,719 - GFF2023 0.24 -1.0
695,719 - GFF2023 0.24 -0.4
695,719 - GFF2023 0.24 -0.9
696,079 + GFF2023 0.48 +0.3
696,080 - GFF2023 0.48 -0.1
696,082 + GFF2023 0.48 -0.5
696,082 + GFF2023 0.48 +0.4
696,082 + GFF2023 0.48 +0.0
696,328 + GFF2023 0.64 -0.3
696,328 + GFF2023 0.64 -0.7
696,328 + GFF2023 0.64 -0.4
696,343 + GFF2023 0.65 -1.4
696,343 + GFF2023 0.65 -0.9
696,343 + GFF2023 0.65 -0.4
696,343 + GFF2023 0.65 +0.4
696,343 + GFF2023 0.65 +0.5
696,344 - GFF2023 0.65 -0.3
696,344 - GFF2023 0.65 -0.6
696,344 - GFF2023 0.65 -0.2
696,344 - GFF2023 0.65 +0.0
696,344 - GFF2023 0.65 +0.5
696,349 + GFF2023 0.65 -0.6
696,350 - GFF2023 0.65 -0.1
696,350 - GFF2023 0.65 +0.3
696,350 - GFF2023 0.65 -0.5
696,350 - GFF2023 0.65 +0.2
696,350 - GFF2023 0.65 +1.4
696,350 - GFF2023 0.65 +0.4
696,377 - GFF2023 0.67 -0.0
696,377 - GFF2023 0.67 -0.3
696,377 - GFF2023 0.67 -0.6
696,418 + GFF2023 0.70 +0.2
696,419 - GFF2023 0.70 +0.4
696,419 - GFF2023 0.70 -0.6
696,419 - GFF2023 0.70 +0.3
696,568 + GFF2023 0.80 +0.6
696,635 - GFF2023 0.84 +0.4
696,715 + GFF2023 0.90 +0.4
697,017 + GFF2024 0.14 -0.3
697,017 + GFF2024 0.14 -0.0
697,047 + GFF2024 0.17 +0.3
697,062 + GFF2024 0.18 -1.3
697,062 + GFF2024 0.18 +0.0
697,063 - GFF2024 0.18 +0.2
697,063 - GFF2024 0.18 +0.2
697,146 + GFF2024 0.26 -0.7
697,146 + GFF2024 0.26 -0.6
697,146 + GFF2024 0.26 -0.6
697,146 + GFF2024 0.26 +0.1
697,147 - GFF2024 0.26 +0.4
697,147 - GFF2024 0.26 +1.2
697,147 - GFF2024 0.26 +0.0
697,148 + GFF2024 0.26 +0.8
697,148 + GFF2024 0.26 +0.4
697,149 - GFF2024 0.26 -1.7
697,149 - GFF2024 0.26 -0.6
697,155 + GFF2024 0.27 -0.4
697,155 + GFF2024 0.27 -0.1
697,156 - GFF2024 0.27 -1.0
697,236 + GFF2024 0.34 +0.7
697,237 - GFF2024 0.34 +0.1
697,237 - GFF2024 0.34 +0.3
697,248 + GFF2024 0.35 +0.4
697,248 + GFF2024 0.35 -1.5
697,248 + GFF2024 0.35 +0.1
697,248 + GFF2024 0.35 -0.1
697,248 + GFF2024 0.35 -0.2
697,249 - GFF2024 0.35 -0.5
697,249 - GFF2024 0.35 -0.5
697,249 - GFF2024 0.35 -0.4
697,249 - GFF2024 0.35 -0.1
697,435 - GFF2024 0.53 +0.3
697,815 + GFF2024 0.88 +0.7
697,816 - GFF2024 0.89 -0.0
697,872 + -1.5
697,872 + +0.4
697,872 + +0.3
697,873 - -0.2
697,873 - -1.6
697,873 - -0.5
697,873 - -0.7

Or see this region's nucleotide sequence