Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2019 and GFF2020 are separated by 5 nucleotides GFF2020 and GFF2021 are separated by 12 nucleotides GFF2021 and GFF2022 are separated by 166 nucleotides GFF2022 and GFF2023 overlap by 1 nucleotides
GFF2019 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 691,874 to 693,451
GFF2019
GFF2020 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 693,457 to 694,614
GFF2020
GFF2021 - hypothetical protein, at 694,627 to 694,752
GFF2021
GFF2022 - hypothetical protein, at 694,919 to 695,359
GFF2022
GFF2023 - hypothetical protein, at 695,359 to 696,873
GFF2023
Position (kb) 693
694
695 Strain fitness (log2 ratio) -1
0
1
2 at 692.492 kb on + strand, within GFF2019 at 692.493 kb on - strand, within GFF2019 at 692.493 kb on - strand, within GFF2019 at 692.603 kb on + strand, within GFF2019 at 692.604 kb on - strand, within GFF2019 at 692.945 kb on + strand, within GFF2019 at 692.966 kb on + strand, within GFF2019 at 692.967 kb on - strand, within GFF2019 at 692.967 kb on - strand, within GFF2019 at 692.967 kb on - strand, within GFF2019 at 693.113 kb on + strand, within GFF2019 at 693.113 kb on + strand, within GFF2019 at 693.114 kb on - strand, within GFF2019 at 693.244 kb on + strand, within GFF2019 at 693.244 kb on + strand, within GFF2019 at 693.244 kb on + strand, within GFF2019 at 693.332 kb on + strand at 693.333 kb on - strand at 693.481 kb on + strand at 693.481 kb on + strand at 693.482 kb on - strand at 693.707 kb on - strand, within GFF2020 at 693.707 kb on - strand, within GFF2020 at 693.941 kb on - strand, within GFF2020 at 693.941 kb on - strand, within GFF2020 at 693.941 kb on - strand, within GFF2020 at 693.941 kb on - strand, within GFF2020 at 693.941 kb on - strand, within GFF2020 at 693.977 kb on - strand, within GFF2020 at 693.978 kb on - strand, within GFF2020 at 694.142 kb on - strand, within GFF2020 at 694.142 kb on - strand, within GFF2020 at 694.249 kb on + strand, within GFF2020 at 694.249 kb on + strand, within GFF2020 at 694.249 kb on + strand, within GFF2020 at 694.250 kb on - strand, within GFF2020 at 694.250 kb on - strand, within GFF2020 at 694.250 kb on - strand, within GFF2020 at 694.534 kb on + strand at 694.535 kb on - strand at 694.535 kb on - strand at 694.535 kb on - strand at 694.549 kb on + strand at 694.550 kb on - strand at 694.609 kb on + strand at 694.610 kb on - strand at 694.633 kb on + strand at 694.634 kb on - strand at 694.634 kb on - strand at 694.634 kb on - strand at 694.750 kb on + strand at 694.750 kb on + strand at 694.750 kb on + strand at 694.750 kb on + strand at 694.750 kb on + strand at 694.750 kb on + strand at 694.751 kb on - strand at 694.751 kb on - strand at 694.880 kb on + strand at 695.114 kb on + strand, within GFF2022 at 695.115 kb on - strand, within GFF2022 at 695.533 kb on + strand, within GFF2023
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 692,492 + GFF2019 0.39 -0.0 692,493 - GFF2019 0.39 -0.5 692,493 - GFF2019 0.39 -0.3 692,603 + GFF2019 0.46 -1.0 692,604 - GFF2019 0.46 -0.7 692,945 + GFF2019 0.68 +0.6 692,966 + GFF2019 0.69 -0.1 692,967 - GFF2019 0.69 -0.1 692,967 - GFF2019 0.69 +0.9 692,967 - GFF2019 0.69 -0.4 693,113 + GFF2019 0.79 +0.0 693,113 + GFF2019 0.79 +1.4 693,114 - GFF2019 0.79 -0.7 693,244 + GFF2019 0.87 +0.5 693,244 + GFF2019 0.87 +0.3 693,244 + GFF2019 0.87 +0.0 693,332 + +0.8 693,333 - -0.4 693,481 + +0.0 693,481 + -0.6 693,482 - +0.6 693,707 - GFF2020 0.22 +1.4 693,707 - GFF2020 0.22 -1.2 693,941 - GFF2020 0.42 +0.3 693,941 - GFF2020 0.42 -1.5 693,941 - GFF2020 0.42 -0.5 693,941 - GFF2020 0.42 +0.0 693,941 - GFF2020 0.42 +1.8 693,977 - GFF2020 0.45 +0.1 693,978 - GFF2020 0.45 +0.8 694,142 - GFF2020 0.59 -1.4 694,142 - GFF2020 0.59 -0.3 694,249 + GFF2020 0.68 -0.6 694,249 + GFF2020 0.68 -1.0 694,249 + GFF2020 0.68 -0.8 694,250 - GFF2020 0.68 +0.0 694,250 - GFF2020 0.68 -0.5 694,250 - GFF2020 0.68 -0.3 694,534 + -1.1 694,535 - +0.4 694,535 - +0.1 694,535 - +0.0 694,549 + -1.0 694,550 - +0.9 694,609 + -0.6 694,610 - -0.0 694,633 + -0.6 694,634 - +0.6 694,634 - +0.3 694,634 - +0.1 694,750 + -0.7 694,750 + -0.2 694,750 + -0.3 694,750 + -0.5 694,750 + +0.3 694,750 + -0.2 694,751 - +0.1 694,751 - -1.0 694,880 + -1.0 695,114 + GFF2022 0.44 +0.0 695,115 - GFF2022 0.44 +0.2 695,533 + GFF2023 0.11 +0.5
Or see this region's nucleotide sequence