Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2001 and GFF2002 are separated by 202 nucleotides GFF2002 and GFF2003 overlap by 4 nucleotides GFF2003 and GFF2004 overlap by 13 nucleotides
GFF2001 - HTH-type transcriptional activator RhaS, at 668,155 to 668,994
GFF2001
GFF2002 - hypothetical protein, at 669,197 to 672,193
GFF2002
GFF2003 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 672,190 to 673,014
GFF2003
GFF2004 - Caffeine dehydrogenase subunit gamma, at 673,002 to 673,520
GFF2004
Position (kb) 669
670
671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 668.360 kb on + strand, within GFF2001 at 668.362 kb on + strand, within GFF2001 at 668.362 kb on + strand, within GFF2001 at 668.362 kb on + strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.393 kb on + strand, within GFF2001 at 668.394 kb on - strand, within GFF2001 at 668.407 kb on + strand, within GFF2001 at 668.408 kb on - strand, within GFF2001 at 668.408 kb on - strand, within GFF2001 at 668.409 kb on + strand, within GFF2001 at 668.727 kb on + strand, within GFF2001 at 668.727 kb on + strand, within GFF2001 at 668.727 kb on + strand, within GFF2001 at 668.815 kb on + strand, within GFF2001 at 668.815 kb on + strand, within GFF2001 at 668.815 kb on + strand, within GFF2001 at 668.816 kb on - strand, within GFF2001 at 668.816 kb on - strand, within GFF2001 at 668.816 kb on - strand, within GFF2001 at 668.883 kb on + strand, within GFF2001 at 668.943 kb on + strand at 668.943 kb on + strand at 669.562 kb on - strand, within GFF2002 at 669.596 kb on + strand, within GFF2002 at 669.596 kb on + strand, within GFF2002 at 669.597 kb on - strand, within GFF2002 at 669.705 kb on - strand, within GFF2002 at 669.798 kb on - strand, within GFF2002 at 669.798 kb on - strand, within GFF2002 at 669.798 kb on - strand, within GFF2002 at 669.798 kb on - strand, within GFF2002 at 669.815 kb on + strand, within GFF2002 at 669.836 kb on + strand, within GFF2002 at 669.981 kb on - strand, within GFF2002 at 670.196 kb on + strand, within GFF2002 at 670.226 kb on + strand, within GFF2002 at 670.226 kb on + strand, within GFF2002 at 670.227 kb on - strand, within GFF2002 at 670.319 kb on + strand, within GFF2002 at 670.319 kb on + strand, within GFF2002 at 670.320 kb on - strand, within GFF2002 at 670.460 kb on + strand, within GFF2002 at 670.547 kb on - strand, within GFF2002 at 670.547 kb on - strand, within GFF2002 at 670.547 kb on - strand, within GFF2002 at 670.547 kb on - strand, within GFF2002 at 670.547 kb on - strand, within GFF2002 at 670.547 kb on - strand, within GFF2002 at 670.550 kb on + strand, within GFF2002 at 670.563 kb on - strand, within GFF2002 at 670.595 kb on - strand, within GFF2002 at 670.595 kb on - strand, within GFF2002 at 670.601 kb on + strand, within GFF2002 at 670.603 kb on + strand, within GFF2002 at 670.856 kb on + strand, within GFF2002 at 670.857 kb on - strand, within GFF2002 at 670.857 kb on - strand, within GFF2002 at 670.857 kb on - strand, within GFF2002 at 670.857 kb on - strand, within GFF2002 at 671.189 kb on + strand, within GFF2002 at 671.189 kb on + strand, within GFF2002 at 671.190 kb on - strand, within GFF2002 at 671.241 kb on - strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.345 kb on + strand, within GFF2002 at 671.346 kb on - strand, within GFF2002 at 671.346 kb on - strand, within GFF2002 at 671.346 kb on - strand, within GFF2002 at 671.346 kb on - strand, within GFF2002 at 671.346 kb on - strand, within GFF2002 at 671.351 kb on + strand, within GFF2002 at 671.393 kb on + strand, within GFF2002 at 671.393 kb on + strand, within GFF2002 at 671.394 kb on - strand, within GFF2002 at 671.852 kb on + strand, within GFF2002 at 671.853 kb on - strand, within GFF2002 at 671.996 kb on + strand at 671.996 kb on + strand at 671.997 kb on - strand at 671.997 kb on - strand at 671.997 kb on - strand at 672.002 kb on + strand at 672.211 kb on + strand at 672.211 kb on + strand at 672.211 kb on + strand at 672.212 kb on - strand at 672.212 kb on - strand at 672.301 kb on - strand, within GFF2003 at 672.301 kb on - strand, within GFF2003
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 668,360 + GFF2001 0.24 +0.5 668,362 + GFF2001 0.25 +0.2 668,362 + GFF2001 0.25 +0.5 668,362 + GFF2001 0.25 +0.0 668,363 - GFF2001 0.25 -0.7 668,363 - GFF2001 0.25 +0.1 668,363 - GFF2001 0.25 +0.3 668,363 - GFF2001 0.25 -0.3 668,363 - GFF2001 0.25 -0.2 668,363 - GFF2001 0.25 +0.0 668,363 - GFF2001 0.25 +0.9 668,363 - GFF2001 0.25 -3.1 668,393 + GFF2001 0.28 -0.2 668,394 - GFF2001 0.28 +0.4 668,407 + GFF2001 0.30 -0.1 668,408 - GFF2001 0.30 -0.1 668,408 - GFF2001 0.30 -0.4 668,409 + GFF2001 0.30 -0.1 668,727 + GFF2001 0.68 -1.5 668,727 + GFF2001 0.68 -0.5 668,727 + GFF2001 0.68 -0.2 668,815 + GFF2001 0.79 +0.6 668,815 + GFF2001 0.79 +0.0 668,815 + GFF2001 0.79 -0.5 668,816 - GFF2001 0.79 -0.1 668,816 - GFF2001 0.79 +0.8 668,816 - GFF2001 0.79 +0.9 668,883 + GFF2001 0.87 -0.4 668,943 + -0.1 668,943 + +0.0 669,562 - GFF2002 0.12 +0.1 669,596 + GFF2002 0.13 -0.4 669,596 + GFF2002 0.13 +0.9 669,597 - GFF2002 0.13 +0.1 669,705 - GFF2002 0.17 -1.8 669,798 - GFF2002 0.20 +0.0 669,798 - GFF2002 0.20 -0.3 669,798 - GFF2002 0.20 +1.1 669,798 - GFF2002 0.20 -0.9 669,815 + GFF2002 0.21 +0.2 669,836 + GFF2002 0.21 +1.6 669,981 - GFF2002 0.26 -1.0 670,196 + GFF2002 0.33 -1.2 670,226 + GFF2002 0.34 +0.5 670,226 + GFF2002 0.34 -0.3 670,227 - GFF2002 0.34 +0.6 670,319 + GFF2002 0.37 +0.8 670,319 + GFF2002 0.37 -0.6 670,320 - GFF2002 0.37 -0.7 670,460 + GFF2002 0.42 -0.2 670,547 - GFF2002 0.45 +0.3 670,547 - GFF2002 0.45 -2.5 670,547 - GFF2002 0.45 -0.0 670,547 - GFF2002 0.45 +0.4 670,547 - GFF2002 0.45 -0.5 670,547 - GFF2002 0.45 -0.3 670,550 + GFF2002 0.45 -0.3 670,563 - GFF2002 0.46 -0.4 670,595 - GFF2002 0.47 +0.1 670,595 - GFF2002 0.47 -0.1 670,601 + GFF2002 0.47 +0.1 670,603 + GFF2002 0.47 +0.0 670,856 + GFF2002 0.55 -0.4 670,857 - GFF2002 0.55 -0.4 670,857 - GFF2002 0.55 -0.1 670,857 - GFF2002 0.55 -0.0 670,857 - GFF2002 0.55 -0.3 671,189 + GFF2002 0.66 -0.2 671,189 + GFF2002 0.66 +1.2 671,190 - GFF2002 0.66 -0.1 671,241 - GFF2002 0.68 +0.8 671,345 + GFF2002 0.72 -0.4 671,345 + GFF2002 0.72 -0.1 671,345 + GFF2002 0.72 +0.0 671,345 + GFF2002 0.72 +0.5 671,345 + GFF2002 0.72 +0.2 671,345 + GFF2002 0.72 +0.4 671,345 + GFF2002 0.72 +1.0 671,345 + GFF2002 0.72 -0.7 671,346 - GFF2002 0.72 -1.7 671,346 - GFF2002 0.72 -0.1 671,346 - GFF2002 0.72 +0.9 671,346 - GFF2002 0.72 +0.0 671,346 - GFF2002 0.72 +0.6 671,351 + GFF2002 0.72 -0.4 671,393 + GFF2002 0.73 +0.0 671,393 + GFF2002 0.73 -0.6 671,394 - GFF2002 0.73 -0.2 671,852 + GFF2002 0.89 -1.1 671,853 - GFF2002 0.89 -1.0 671,996 + -2.0 671,996 + +0.2 671,997 - -0.8 671,997 - +0.1 671,997 - +0.4 672,002 + -0.1 672,211 + +0.6 672,211 + +0.2 672,211 + +0.3 672,212 - +0.1 672,212 - -0.1 672,301 - GFF2003 0.13 +0.6 672,301 - GFF2003 0.13 -0.7
Or see this region's nucleotide sequence