Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1976 and GFF1977 are separated by 102 nucleotides GFF1977 and GFF1978 are separated by 10 nucleotides GFF1978 and GFF1979 are separated by 22 nucleotides
GFF1976 - Nitrate import ATP-binding protein NrtC, at 638,181 to 638,975
GFF1976
GFF1977 - Bacterial hemoglobin, at 639,078 to 639,509
GFF1977
GFF1978 - Nitrite reductase [NAD(P)H], at 639,520 to 640,734
GFF1978
GFF1979 - Sulfite reductase [ferredoxin], at 640,757 to 642,517
GFF1979
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1 at 638.835 kb on + strand, within GFF1976 at 638.835 kb on + strand, within GFF1976 at 638.835 kb on + strand, within GFF1976 at 638.836 kb on - strand, within GFF1976 at 638.907 kb on + strand at 638.907 kb on + strand at 638.907 kb on + strand at 638.907 kb on + strand at 638.908 kb on - strand at 639.333 kb on + strand, within GFF1977 at 639.355 kb on - strand, within GFF1977 at 639.355 kb on - strand, within GFF1977 at 639.644 kb on - strand, within GFF1978 at 639.748 kb on + strand, within GFF1978 at 640.375 kb on + strand, within GFF1978 at 640.375 kb on + strand, within GFF1978 at 640.375 kb on + strand, within GFF1978 at 640.376 kb on - strand, within GFF1978 at 640.376 kb on - strand, within GFF1978 at 640.376 kb on - strand, within GFF1978 at 640.396 kb on + strand, within GFF1978 at 640.396 kb on + strand, within GFF1978 at 640.397 kb on - strand, within GFF1978 at 640.448 kb on - strand, within GFF1978 at 640.646 kb on - strand at 640.657 kb on - strand at 640.790 kb on + strand at 640.791 kb on - strand at 640.791 kb on - strand at 640.988 kb on + strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.072 kb on + strand, within GFF1979 at 641.072 kb on + strand, within GFF1979 at 641.072 kb on + strand, within GFF1979 at 641.073 kb on - strand, within GFF1979 at 641.073 kb on - strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.397 kb on - strand, within GFF1979 at 641.397 kb on - strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.421 kb on - strand, within GFF1979 at 641.711 kb on + strand, within GFF1979 at 641.712 kb on - strand, within GFF1979 at 641.712 kb on - strand, within GFF1979
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 638,835 + GFF1976 0.82 +0.9 638,835 + GFF1976 0.82 +1.1 638,835 + GFF1976 0.82 -0.0 638,836 - GFF1976 0.82 -0.5 638,907 + -1.1 638,907 + -0.6 638,907 + +0.0 638,907 + -1.1 638,908 - +0.7 639,333 + GFF1977 0.59 -0.0 639,355 - GFF1977 0.64 -1.5 639,355 - GFF1977 0.64 +0.0 639,644 - GFF1978 0.10 +0.3 639,748 + GFF1978 0.19 -0.6 640,375 + GFF1978 0.70 -1.6 640,375 + GFF1978 0.70 -2.2 640,375 + GFF1978 0.70 -0.6 640,376 - GFF1978 0.70 +0.1 640,376 - GFF1978 0.70 -0.1 640,376 - GFF1978 0.70 -0.2 640,396 + GFF1978 0.72 -0.2 640,396 + GFF1978 0.72 +0.0 640,397 - GFF1978 0.72 +0.1 640,448 - GFF1978 0.76 +0.1 640,646 - +0.3 640,657 - +0.7 640,790 + +0.7 640,791 - +0.2 640,791 - +0.6 640,988 + GFF1979 0.13 +0.3 641,058 - GFF1979 0.17 +0.0 641,058 - GFF1979 0.17 -0.1 641,058 - GFF1979 0.17 -0.8 641,058 - GFF1979 0.17 -0.6 641,058 - GFF1979 0.17 +0.5 641,072 + GFF1979 0.18 -1.0 641,072 + GFF1979 0.18 +0.2 641,072 + GFF1979 0.18 -1.2 641,073 - GFF1979 0.18 -0.4 641,073 - GFF1979 0.18 -0.2 641,396 + GFF1979 0.36 +0.2 641,396 + GFF1979 0.36 -0.6 641,396 + GFF1979 0.36 +0.2 641,396 + GFF1979 0.36 +0.5 641,397 - GFF1979 0.36 +1.2 641,397 - GFF1979 0.36 +0.8 641,420 + GFF1979 0.38 -0.7 641,420 + GFF1979 0.38 -1.0 641,420 + GFF1979 0.38 +0.2 641,420 + GFF1979 0.38 +0.6 641,420 + GFF1979 0.38 -0.7 641,421 - GFF1979 0.38 -0.1 641,711 + GFF1979 0.54 +0.5 641,712 - GFF1979 0.54 -0.3 641,712 - GFF1979 0.54 -0.7
Or see this region's nucleotide sequence