Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF196 and GFF197 are separated by 139 nucleotides GFF197 and GFF198 are separated by 22 nucleotides GFF198 and GFF199 are separated by 62 nucleotides
GFF196 - Hydantoin racemase, at 206,204 to 206,911
GFF196
GFF197 - hypothetical protein, at 207,051 to 207,800
GFF197
GFF198 - Glutathione S-transferase GstB, at 207,823 to 208,458
GFF198
GFF199 - Type I secretion system membrane fusion protein PrsE, at 208,521 to 209,864
GFF199
Position (kb) 207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 206.330 kb on + strand, within GFF196 at 206.330 kb on + strand, within GFF196 at 206.331 kb on - strand, within GFF196 at 206.445 kb on - strand, within GFF196 at 206.973 kb on + strand at 206.974 kb on - strand at 206.974 kb on - strand at 206.975 kb on + strand at 206.976 kb on - strand at 206.976 kb on - strand at 207.235 kb on - strand, within GFF197 at 207.235 kb on - strand, within GFF197 at 207.240 kb on + strand, within GFF197 at 207.240 kb on + strand, within GFF197 at 207.313 kb on - strand, within GFF197 at 207.517 kb on - strand, within GFF197 at 207.742 kb on - strand at 207.742 kb on - strand at 207.742 kb on - strand at 207.777 kb on + strand at 207.777 kb on + strand at 207.777 kb on + strand at 207.882 kb on - strand at 208.007 kb on + strand, within GFF198 at 208.007 kb on + strand, within GFF198 at 208.153 kb on - strand, within GFF198 at 208.244 kb on + strand, within GFF198 at 208.254 kb on + strand, within GFF198 at 208.254 kb on + strand, within GFF198 at 208.254 kb on + strand, within GFF198 at 208.492 kb on + strand at 208.574 kb on - strand at 208.693 kb on + strand, within GFF199 at 208.693 kb on + strand, within GFF199 at 208.694 kb on - strand, within GFF199
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 206,330 + GFF196 0.18 +0.3 206,330 + GFF196 0.18 -0.7 206,331 - GFF196 0.18 -0.3 206,445 - GFF196 0.34 +0.6 206,973 + +0.2 206,974 - +0.2 206,974 - -0.4 206,975 + -0.8 206,976 - -0.8 206,976 - +1.2 207,235 - GFF197 0.25 +1.4 207,235 - GFF197 0.25 -0.3 207,240 + GFF197 0.25 +0.9 207,240 + GFF197 0.25 +0.2 207,313 - GFF197 0.35 -0.8 207,517 - GFF197 0.62 -0.0 207,742 - -0.2 207,742 - -0.9 207,742 - -0.6 207,777 + +1.1 207,777 + -0.5 207,777 + +1.3 207,882 - -0.2 208,007 + GFF198 0.29 -0.2 208,007 + GFF198 0.29 +0.5 208,153 - GFF198 0.52 +0.6 208,244 + GFF198 0.66 +0.2 208,254 + GFF198 0.68 -0.1 208,254 + GFF198 0.68 -0.9 208,254 + GFF198 0.68 -2.4 208,492 + +1.5 208,574 - -0.4 208,693 + GFF199 0.13 +0.9 208,693 + GFF199 0.13 -0.4 208,694 - GFF199 0.13 +0.4
Or see this region's nucleotide sequence