Strain Fitness in Xanthobacter sp. DMC5 around GFF1965

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1964 and GFF1965 are separated by 122 nucleotidesGFF1965 and GFF1966 are separated by 53 nucleotidesGFF1966 and GFF1967 are separated by 14 nucleotides GFF1964 - HTH-type transcriptional repressor CytR, at 623,059 to 624,162 GFF1964 GFF1965 - Hydroxyquinol 1,2-dioxygenase, at 624,285 to 625,253 GFF1965 GFF1966 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 625,307 to 626,134 GFF1966 GFF1967 - 3-keto-5-aminohexanoate cleavage enzyme, at 626,149 to 627,069 GFF1967 Position (kb) 624 625 626Strain fitness (log2 ratio) -1 0 1at 624.807 kb on + strand, within GFF1965at 624.926 kb on + strand, within GFF1965at 625.041 kb on + strand, within GFF1965at 625.042 kb on - strand, within GFF1965at 625.042 kb on - strand, within GFF1965at 625.186 kb on - strandat 625.197 kb on + strandat 625.859 kb on + strand, within GFF1966at 625.859 kb on + strand, within GFF1966at 625.956 kb on + strand, within GFF1966at 625.957 kb on - strand, within GFF1966

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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624,807 + GFF1965 0.54 -0.5
624,926 + GFF1965 0.66 -0.4
625,041 + GFF1965 0.78 -0.3
625,042 - GFF1965 0.78 -0.2
625,042 - GFF1965 0.78 -0.1
625,186 - +0.5
625,197 + +0.9
625,859 + GFF1966 0.67 +0.2
625,859 + GFF1966 0.67 +0.2
625,956 + GFF1966 0.78 +0.1
625,957 - GFF1966 0.79 +0.1

Or see this region's nucleotide sequence