Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1902 and GFF1903 are separated by 116 nucleotides GFF1903 and GFF1904 overlap by 1 nucleotides GFF1904 and GFF1905 overlap by 1 nucleotides
GFF1902 - hypothetical protein, at 560,707 to 561,057
GFF1902
GFF1903 - hypothetical protein, at 561,174 to 561,848
GFF1903
GFF1904 - hypothetical protein, at 561,848 to 562,921
GFF1904
GFF1905 - sugar efflux transporter, at 562,921 to 564,906
GFF1905
Position (kb) 561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.067 kb on - strand at 561.108 kb on - strand at 561.120 kb on - strand at 561.120 kb on - strand at 561.120 kb on - strand at 561.197 kb on - strand at 561.197 kb on - strand at 561.346 kb on + strand, within GFF1903 at 561.356 kb on - strand, within GFF1903 at 561.356 kb on - strand, within GFF1903 at 561.382 kb on + strand, within GFF1903 at 561.520 kb on + strand, within GFF1903 at 561.632 kb on - strand, within GFF1903 at 561.656 kb on - strand, within GFF1903 at 561.656 kb on - strand, within GFF1903 at 561.700 kb on + strand, within GFF1903 at 561.700 kb on + strand, within GFF1903 at 561.857 kb on + strand at 561.857 kb on + strand at 561.858 kb on - strand at 562.030 kb on - strand, within GFF1904 at 562.033 kb on - strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.170 kb on + strand, within GFF1904 at 562.285 kb on + strand, within GFF1904 at 562.286 kb on - strand, within GFF1904 at 562.345 kb on - strand, within GFF1904 at 562.374 kb on + strand, within GFF1904 at 562.374 kb on + strand, within GFF1904 at 562.374 kb on + strand, within GFF1904 at 562.375 kb on - strand, within GFF1904 at 562.375 kb on - strand, within GFF1904 at 562.375 kb on - strand, within GFF1904 at 562.499 kb on + strand, within GFF1904 at 562.546 kb on - strand, within GFF1904 at 562.581 kb on + strand, within GFF1904 at 562.581 kb on + strand, within GFF1904 at 562.585 kb on + strand, within GFF1904 at 562.585 kb on + strand, within GFF1904 at 562.587 kb on + strand, within GFF1904 at 562.587 kb on + strand, within GFF1904 at 562.588 kb on - strand, within GFF1904 at 562.588 kb on - strand, within GFF1904 at 562.588 kb on - strand, within GFF1904 at 562.704 kb on + strand, within GFF1904 at 562.705 kb on - strand, within GFF1904 at 562.733 kb on - strand, within GFF1904 at 563.005 kb on + strand at 563.826 kb on - strand, within GFF1905 at 563.867 kb on + strand, within GFF1905 at 563.867 kb on + strand, within GFF1905 at 563.868 kb on - strand, within GFF1905 at 563.894 kb on + strand, within GFF1905 at 563.894 kb on + strand, within GFF1905 at 563.895 kb on - strand, within GFF1905
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 561,067 - -2.1 561,108 - -0.2 561,120 - +0.2 561,120 - -0.0 561,120 - -0.4 561,197 - -0.5 561,197 - -0.0 561,346 + GFF1903 0.25 +0.3 561,356 - GFF1903 0.27 +0.2 561,356 - GFF1903 0.27 -0.2 561,382 + GFF1903 0.31 -0.6 561,520 + GFF1903 0.51 +0.4 561,632 - GFF1903 0.68 -0.3 561,656 - GFF1903 0.71 -0.1 561,656 - GFF1903 0.71 +0.8 561,700 + GFF1903 0.78 +0.6 561,700 + GFF1903 0.78 +0.1 561,857 + +0.7 561,857 + +0.3 561,858 - +0.3 562,030 - GFF1904 0.17 -0.7 562,033 - GFF1904 0.17 +0.9 562,170 + GFF1904 0.30 +0.6 562,170 + GFF1904 0.30 +1.1 562,170 + GFF1904 0.30 +0.3 562,170 + GFF1904 0.30 +0.4 562,285 + GFF1904 0.41 +1.0 562,286 - GFF1904 0.41 -0.3 562,345 - GFF1904 0.46 +0.1 562,374 + GFF1904 0.49 +0.1 562,374 + GFF1904 0.49 +0.2 562,374 + GFF1904 0.49 +0.6 562,375 - GFF1904 0.49 -1.3 562,375 - GFF1904 0.49 +0.3 562,375 - GFF1904 0.49 +0.1 562,499 + GFF1904 0.61 -0.6 562,546 - GFF1904 0.65 +1.0 562,581 + GFF1904 0.68 -0.1 562,581 + GFF1904 0.68 -0.3 562,585 + GFF1904 0.69 +0.3 562,585 + GFF1904 0.69 +0.6 562,587 + GFF1904 0.69 +0.3 562,587 + GFF1904 0.69 +1.9 562,588 - GFF1904 0.69 +0.3 562,588 - GFF1904 0.69 -0.0 562,588 - GFF1904 0.69 +1.0 562,704 + GFF1904 0.80 -1.1 562,705 - GFF1904 0.80 +0.2 562,733 - GFF1904 0.82 +0.1 563,005 + -0.4 563,826 - GFF1905 0.46 +0.4 563,867 + GFF1905 0.48 +0.0 563,867 + GFF1905 0.48 -0.0 563,868 - GFF1905 0.48 +0.5 563,894 + GFF1905 0.49 -0.4 563,894 + GFF1905 0.49 -0.6 563,895 - GFF1905 0.49 -0.2
Or see this region's nucleotide sequence