Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1856 and GFF1857 are separated by 59 nucleotides GFF1857 and GFF1858 are separated by 149 nucleotides GFF1858 and GFF1859 overlap by 16 nucleotides GFF1859 and GFF1860 are separated by 86 nucleotides GFF1860 and GFF1861 are separated by 81 nucleotides
GFF1856 - hypothetical protein, at 517,718 to 520,645
GFF1856
GFF1857 - hypothetical protein, at 520,705 to 521,184
GFF1857
GFF1858 - hypothetical protein, at 521,334 to 521,942
GFF1858
GFF1859 - hypothetical protein, at 521,927 to 522,439
GFF1859
GFF1860 - hypothetical protein, at 522,526 to 522,630
GFF1860
GFF1861 - hypothetical protein, at 522,712 to 524,034
GFF1861
Position (kb) 521
522 Strain fitness (log2 ratio) -2
-1
0
1 at 520.643 kb on + strand at 520.655 kb on - strand at 520.682 kb on + strand at 520.706 kb on + strand at 520.707 kb on - strand at 520.707 kb on - strand at 521.091 kb on + strand, within GFF1857 at 521.093 kb on + strand, within GFF1857 at 521.309 kb on + strand at 521.347 kb on + strand at 521.365 kb on + strand at 521.366 kb on - strand at 521.440 kb on + strand, within GFF1858 at 521.440 kb on + strand, within GFF1858 at 521.441 kb on - strand, within GFF1858 at 521.441 kb on - strand, within GFF1858 at 521.441 kb on - strand, within GFF1858 at 521.441 kb on - strand, within GFF1858 at 521.534 kb on - strand, within GFF1858 at 522.105 kb on + strand, within GFF1859 at 522.473 kb on + strand at 522.545 kb on + strand, within GFF1860 at 522.546 kb on - strand, within GFF1860 at 522.663 kb on + strand at 522.663 kb on + strand at 522.664 kb on - strand at 522.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 520,643 + -1.5 520,655 - -0.2 520,682 + -0.7 520,706 + +0.0 520,707 - -0.1 520,707 - -0.2 521,091 + GFF1857 0.80 +0.3 521,093 + GFF1857 0.81 +1.1 521,309 + -0.9 521,347 + +0.4 521,365 + -0.5 521,366 - +0.3 521,440 + GFF1858 0.17 -0.4 521,440 + GFF1858 0.17 -0.4 521,441 - GFF1858 0.18 +0.1 521,441 - GFF1858 0.18 -1.9 521,441 - GFF1858 0.18 +1.1 521,441 - GFF1858 0.18 -1.1 521,534 - GFF1858 0.33 -0.6 522,105 + GFF1859 0.35 +0.4 522,473 + -0.8 522,545 + GFF1860 0.18 -0.5 522,546 - GFF1860 0.19 +0.5 522,663 + -0.9 522,663 + +0.7 522,664 - -0.5 522,664 - -1.5
Or see this region's nucleotide sequence