Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1834 and GFF1835 are separated by 31 nucleotides GFF1835 and GFF1836 are separated by 193 nucleotides
GFF1834 - Crotonyl-CoA carboxylase/reductase, at 492,456 to 493,739
GFF1834
GFF1835 - hypothetical protein, at 493,771 to 495,048
GFF1835
GFF1836 - UDP-N-acetylmuramate--L-alanine ligase, at 495,242 to 496,654
GFF1836
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 493.015 kb on - strand, within GFF1834 at 493.015 kb on - strand, within GFF1834 at 493.015 kb on - strand, within GFF1834 at 493.015 kb on - strand, within GFF1834 at 493.086 kb on + strand, within GFF1834 at 493.087 kb on - strand, within GFF1834 at 493.087 kb on - strand, within GFF1834 at 493.197 kb on + strand, within GFF1834 at 493.198 kb on - strand, within GFF1834 at 493.284 kb on + strand, within GFF1834 at 493.285 kb on - strand, within GFF1834 at 493.285 kb on - strand, within GFF1834 at 493.285 kb on - strand, within GFF1834 at 493.363 kb on - strand, within GFF1834 at 493.479 kb on + strand, within GFF1834 at 493.479 kb on + strand, within GFF1834 at 493.479 kb on + strand, within GFF1834 at 493.590 kb on + strand, within GFF1834 at 493.937 kb on + strand, within GFF1835 at 494.133 kb on - strand, within GFF1835 at 494.451 kb on - strand, within GFF1835 at 494.528 kb on + strand, within GFF1835 at 494.564 kb on + strand, within GFF1835 at 494.663 kb on + strand, within GFF1835 at 494.672 kb on + strand, within GFF1835 at 494.672 kb on + strand, within GFF1835 at 494.673 kb on - strand, within GFF1835 at 494.828 kb on + strand, within GFF1835 at 494.828 kb on + strand, within GFF1835 at 494.829 kb on - strand, within GFF1835 at 494.829 kb on - strand, within GFF1835 at 495.182 kb on + strand at 495.182 kb on + strand at 495.185 kb on - strand at 495.224 kb on + strand at 495.224 kb on + strand at 495.225 kb on - strand at 495.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 493,015 - GFF1834 0.44 -1.2 493,015 - GFF1834 0.44 -0.4 493,015 - GFF1834 0.44 +0.4 493,015 - GFF1834 0.44 +0.7 493,086 + GFF1834 0.49 +0.2 493,087 - GFF1834 0.49 -0.5 493,087 - GFF1834 0.49 -1.8 493,197 + GFF1834 0.58 -1.0 493,198 - GFF1834 0.58 -1.9 493,284 + GFF1834 0.64 -0.0 493,285 - GFF1834 0.65 +0.0 493,285 - GFF1834 0.65 +0.9 493,285 - GFF1834 0.65 -0.4 493,363 - GFF1834 0.71 -1.4 493,479 + GFF1834 0.80 +0.7 493,479 + GFF1834 0.80 +0.3 493,479 + GFF1834 0.80 +0.7 493,590 + GFF1834 0.88 +0.2 493,937 + GFF1835 0.13 -0.8 494,133 - GFF1835 0.28 +0.0 494,451 - GFF1835 0.53 +0.3 494,528 + GFF1835 0.59 +0.5 494,564 + GFF1835 0.62 +0.7 494,663 + GFF1835 0.70 -2.3 494,672 + GFF1835 0.71 -0.7 494,672 + GFF1835 0.71 +0.7 494,673 - GFF1835 0.71 -0.1 494,828 + GFF1835 0.83 +0.7 494,828 + GFF1835 0.83 +1.2 494,829 - GFF1835 0.83 -0.0 494,829 - GFF1835 0.83 -0.8 495,182 + -1.1 495,182 + -0.6 495,185 - +0.1 495,224 + -0.1 495,224 + -0.3 495,225 - -0.2 495,225 - +0.1
Or see this region's nucleotide sequence