Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1825 and GFF1826 are separated by 90 nucleotides GFF1826 and GFF1827 are separated by 222 nucleotides GFF1827 and GFF1828 are separated by 8 nucleotides
GFF1825 - Sensor histidine kinase RcsC, at 481,828 to 485,451
GFF1825
GFF1826 - hypothetical protein, at 485,542 to 486,474
GFF1826
GFF1827 - Disulfide bond formation protein B, at 486,697 to 487,290
GFF1827
GFF1828 - hypothetical protein, at 487,299 to 487,454
GFF1828
Position (kb) 485
486
487 Strain fitness (log2 ratio) -1
0
1 at 485.485 kb on + strand at 485.526 kb on + strand at 485.526 kb on + strand at 485.527 kb on - strand at 485.609 kb on + strand at 485.778 kb on - strand, within GFF1826 at 485.778 kb on - strand, within GFF1826 at 485.778 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 485.946 kb on - strand, within GFF1826 at 486.170 kb on + strand, within GFF1826 at 486.171 kb on - strand, within GFF1826 at 486.171 kb on - strand, within GFF1826 at 486.171 kb on - strand, within GFF1826 at 486.182 kb on + strand, within GFF1826 at 486.183 kb on - strand, within GFF1826 at 486.185 kb on + strand, within GFF1826 at 486.185 kb on + strand, within GFF1826 at 486.186 kb on - strand, within GFF1826 at 486.186 kb on - strand, within GFF1826 at 486.265 kb on - strand, within GFF1826 at 486.265 kb on - strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.365 kb on + strand, within GFF1826 at 486.366 kb on - strand, within GFF1826 at 486.422 kb on + strand at 486.422 kb on + strand at 486.423 kb on - strand at 486.434 kb on + strand at 486.435 kb on - strand at 486.549 kb on + strand at 486.550 kb on - strand at 486.962 kb on + strand, within GFF1827 at 486.962 kb on + strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 486.963 kb on - strand, within GFF1827 at 487.079 kb on + strand, within GFF1827 at 487.080 kb on - strand, within GFF1827 at 487.460 kb on - strand at 487.460 kb on - strand at 487.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 485,485 + +0.3 485,526 + +1.2 485,526 + +0.0 485,527 - +0.9 485,609 + -0.2 485,778 - GFF1826 0.25 -0.0 485,778 - GFF1826 0.25 +0.0 485,778 - GFF1826 0.25 -0.2 485,946 - GFF1826 0.43 +0.9 485,946 - GFF1826 0.43 +0.4 485,946 - GFF1826 0.43 +0.2 485,946 - GFF1826 0.43 -0.1 486,170 + GFF1826 0.67 -0.4 486,171 - GFF1826 0.67 -1.0 486,171 - GFF1826 0.67 -0.1 486,171 - GFF1826 0.67 +0.6 486,182 + GFF1826 0.69 +0.0 486,183 - GFF1826 0.69 +0.4 486,185 + GFF1826 0.69 +0.6 486,185 + GFF1826 0.69 +0.6 486,186 - GFF1826 0.69 -0.1 486,186 - GFF1826 0.69 +0.7 486,265 - GFF1826 0.77 +0.2 486,265 - GFF1826 0.77 +1.5 486,365 + GFF1826 0.88 +0.6 486,365 + GFF1826 0.88 +0.6 486,365 + GFF1826 0.88 +0.3 486,365 + GFF1826 0.88 -1.0 486,366 - GFF1826 0.88 +0.9 486,422 + +0.6 486,422 + -1.0 486,423 - +0.4 486,434 + +0.6 486,435 - -0.7 486,549 + +0.7 486,550 - +0.3 486,962 + GFF1827 0.45 +0.1 486,962 + GFF1827 0.45 -1.7 486,963 - GFF1827 0.45 -0.4 486,963 - GFF1827 0.45 +0.1 486,963 - GFF1827 0.45 +0.5 487,079 + GFF1827 0.64 -0.4 487,080 - GFF1827 0.64 +0.2 487,460 - +1.0 487,460 - -0.2 487,460 - -0.2
Or see this region's nucleotide sequence