Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1725 and GFF1726 overlap by 4 nucleotides GFF1726 and GFF1727 are separated by 115 nucleotides GFF1727 and GFF1728 overlap by 1 nucleotides GFF1728 and GFF1729 are separated by 107 nucleotides
GFF1725 - putative glycosyltransferase, at 374,299 to 375,333
GFF1725
GFF1726 - Chitooligosaccharide deacetylase, at 375,330 to 376,178
GFF1726
GFF1727 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 376,294 to 376,938
GFF1727
GFF1728 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 376,938 to 377,651
GFF1728
GFF1729 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 377,759 to 378,526
GFF1729
Position (kb) 376
377 Strain fitness (log2 ratio) -2
-1
0
1 at 375.360 kb on + strand at 375.360 kb on + strand at 375.600 kb on - strand, within GFF1726 at 376.080 kb on + strand, within GFF1726 at 376.080 kb on + strand, within GFF1726 at 376.694 kb on + strand, within GFF1727 at 376.694 kb on + strand, within GFF1727 at 376.695 kb on - strand, within GFF1727 at 376.695 kb on - strand, within GFF1727 at 376.767 kb on - strand, within GFF1727 at 376.877 kb on + strand at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.021 kb on - strand, within GFF1728 at 377.021 kb on - strand, within GFF1728 at 377.147 kb on - strand, within GFF1728 at 377.224 kb on + strand, within GFF1728 at 377.224 kb on + strand, within GFF1728 at 377.225 kb on - strand, within GFF1728 at 377.225 kb on - strand, within GFF1728 at 377.293 kb on + strand, within GFF1728 at 377.417 kb on - strand, within GFF1728 at 377.636 kb on - strand at 377.698 kb on + strand at 377.771 kb on + strand at 377.772 kb on - strand at 377.814 kb on + strand at 377.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 375,360 + -0.1 375,360 + -0.7 375,600 - GFF1726 0.32 -0.4 376,080 + GFF1726 0.88 -0.4 376,080 + GFF1726 0.88 +0.0 376,694 + GFF1727 0.62 +0.6 376,694 + GFF1727 0.62 -0.6 376,695 - GFF1727 0.62 -1.5 376,695 - GFF1727 0.62 -0.7 376,767 - GFF1727 0.73 -0.5 376,877 + -2.4 377,020 + GFF1728 0.11 +0.8 377,020 + GFF1728 0.11 -0.0 377,020 + GFF1728 0.11 +0.0 377,020 + GFF1728 0.11 -0.4 377,020 + GFF1728 0.11 -0.6 377,021 - GFF1728 0.12 -0.2 377,021 - GFF1728 0.12 -1.3 377,147 - GFF1728 0.29 -1.4 377,224 + GFF1728 0.40 -1.6 377,224 + GFF1728 0.40 -0.8 377,225 - GFF1728 0.40 +0.1 377,225 - GFF1728 0.40 +0.7 377,293 + GFF1728 0.50 -0.7 377,417 - GFF1728 0.67 -0.7 377,636 - +0.8 377,698 + -1.6 377,771 + +0.5 377,772 - +0.7 377,814 + -0.7 377,815 - -0.6
Or see this region's nucleotide sequence