Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF167 and GFF168 are separated by 10 nucleotides GFF168 and GFF169 are separated by 342 nucleotides GFF169 and GFF170 are separated by 492 nucleotides
GFF167 - 4-hydroxybenzoate octaprenyltransferase, at 175,680 to 176,645
GFF167
GFF168 - hypothetical protein, at 176,656 to 177,138
GFF168
GFF169 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 177,481 to 178,266
GFF169
GFF170 - Acetolactate synthase isozyme 3 large subunit, at 178,759 to 180,519
GFF170
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2 at 177.187 kb on - strand at 177.189 kb on - strand at 177.189 kb on - strand at 177.189 kb on - strand at 177.189 kb on - strand at 177.212 kb on - strand at 177.212 kb on - strand at 177.212 kb on - strand at 177.506 kb on - strand at 177.586 kb on - strand, within GFF169 at 177.588 kb on - strand, within GFF169 at 177.778 kb on - strand, within GFF169 at 177.985 kb on + strand, within GFF169 at 177.986 kb on - strand, within GFF169 at 178.232 kb on + strand at 178.232 kb on + strand at 178.354 kb on - strand at 178.354 kb on - strand at 178.379 kb on - strand at 178.406 kb on - strand at 178.701 kb on + strand at 178.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 177,187 - -1.0 177,189 - +0.1 177,189 - -1.1 177,189 - -0.5 177,189 - -0.9 177,212 - -0.1 177,212 - -0.2 177,212 - +0.3 177,506 - -0.9 177,586 - GFF169 0.13 -1.3 177,588 - GFF169 0.14 +0.9 177,778 - GFF169 0.38 +0.7 177,985 + GFF169 0.64 +0.3 177,986 - GFF169 0.64 +0.8 178,232 + +0.9 178,232 + +1.3 178,354 - +0.1 178,354 - -0.1 178,379 - +0.5 178,406 - -0.1 178,701 + +1.8 178,714 + +0.8
Or see this region's nucleotide sequence