Strain Fitness in Xanthobacter sp. DMC5 around GFF165

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF163 and GFF164 are separated by 10 nucleotidesGFF164 and GFF165 are separated by 60 nucleotidesGFF165 and GFF166 overlap by 4 nucleotidesGFF166 and GFF167 are separated by 85 nucleotides GFF163 - 3-deoxy-D-manno-octulosonic acid transferase, at 172,436 to 173,731 GFF163 GFF164 - hypothetical protein, at 173,742 to 174,440 GFF164 GFF165 - hypothetical protein, at 174,501 to 174,746 GFF165 GFF166 - Histidinol-phosphatase, at 174,743 to 175,594 GFF166 GFF167 - 4-hydroxybenzoate octaprenyltransferase, at 175,680 to 176,645 GFF167 Position (kb) 174 175Strain fitness (log2 ratio) -1 0 1at 174.553 kb on - strand, within GFF165at 174.563 kb on - strand, within GFF165at 174.629 kb on - strand, within GFF165at 174.862 kb on - strand, within GFF166at 175.481 kb on - strand, within GFF166at 175.608 kb on - strandat 175.634 kb on + strandat 175.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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174,553 - GFF165 0.21 -0.6
174,563 - GFF165 0.25 -0.8
174,629 - GFF165 0.52 -0.5
174,862 - GFF166 0.14 -0.1
175,481 - GFF166 0.87 -0.7
175,608 - +1.1
175,634 + +0.3
175,634 + -0.2

Or see this region's nucleotide sequence