Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1636 and GFF1637 are separated by 131 nucleotides GFF1637 and GFF1638 are separated by 6 nucleotides GFF1638 and GFF1639 are separated by 133 nucleotides GFF1639 and GFF1640 are separated by 106 nucleotides GFF1640 and GFF1641 are separated by 14 nucleotides
GFF1636 - Glutathione S-transferase GST-6.0, at 287,504 to 288,163
GFF1636
GFF1637 - hypothetical protein, at 288,295 to 288,762
GFF1637
GFF1638 - hypothetical protein, at 288,769 to 289,272
GFF1638
GFF1639 - Ferredoxin-2, at 289,406 to 289,741
GFF1639
GFF1640 - Heat shock protein 15, at 289,848 to 290,123
GFF1640
GFF1641 - hypothetical protein, at 290,138 to 293,476
GFF1641
Position (kb) 288
289
290 Strain fitness (log2 ratio) -1
0
1 at 287.796 kb on - strand, within GFF1636 at 287.813 kb on + strand, within GFF1636 at 287.813 kb on + strand, within GFF1636 at 287.828 kb on + strand, within GFF1636 at 287.829 kb on - strand, within GFF1636 at 287.829 kb on - strand, within GFF1636 at 287.948 kb on + strand, within GFF1636 at 287.948 kb on + strand, within GFF1636 at 287.948 kb on + strand, within GFF1636 at 287.948 kb on + strand, within GFF1636 at 287.948 kb on + strand, within GFF1636 at 287.949 kb on - strand, within GFF1636 at 287.949 kb on - strand, within GFF1636 at 287.949 kb on - strand, within GFF1636 at 288.053 kb on + strand, within GFF1636 at 288.053 kb on + strand, within GFF1636 at 288.053 kb on + strand, within GFF1636 at 288.053 kb on + strand, within GFF1636 at 288.053 kb on + strand, within GFF1636 at 288.110 kb on - strand at 288.110 kb on - strand at 288.110 kb on - strand at 288.110 kb on - strand at 288.275 kb on + strand at 288.293 kb on + strand at 288.448 kb on + strand, within GFF1637 at 288.449 kb on - strand, within GFF1637 at 288.577 kb on + strand, within GFF1637 at 288.577 kb on + strand, within GFF1637 at 288.655 kb on + strand, within GFF1637 at 288.655 kb on + strand, within GFF1637 at 288.655 kb on + strand, within GFF1637 at 288.656 kb on - strand, within GFF1637 at 288.701 kb on - strand, within GFF1637 at 288.736 kb on + strand at 288.788 kb on + strand at 288.788 kb on + strand at 288.788 kb on + strand at 288.789 kb on - strand at 288.920 kb on + strand, within GFF1638 at 288.921 kb on - strand, within GFF1638 at 289.038 kb on - strand, within GFF1638 at 289.098 kb on + strand, within GFF1638 at 289.098 kb on + strand, within GFF1638 at 289.098 kb on + strand, within GFF1638 at 289.099 kb on - strand, within GFF1638 at 289.889 kb on + strand, within GFF1640 at 289.889 kb on + strand, within GFF1640 at 289.890 kb on - strand, within GFF1640 at 289.890 kb on - strand, within GFF1640
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 287,796 - GFF1636 0.44 +0.3 287,813 + GFF1636 0.47 +0.2 287,813 + GFF1636 0.47 -0.3 287,828 + GFF1636 0.49 -0.6 287,829 - GFF1636 0.49 +0.4 287,829 - GFF1636 0.49 -0.7 287,948 + GFF1636 0.67 +0.4 287,948 + GFF1636 0.67 -0.5 287,948 + GFF1636 0.67 -0.4 287,948 + GFF1636 0.67 +0.2 287,948 + GFF1636 0.67 +1.6 287,949 - GFF1636 0.67 +0.8 287,949 - GFF1636 0.67 -1.2 287,949 - GFF1636 0.67 -0.1 288,053 + GFF1636 0.83 +1.1 288,053 + GFF1636 0.83 -0.3 288,053 + GFF1636 0.83 +0.4 288,053 + GFF1636 0.83 +0.6 288,053 + GFF1636 0.83 +1.2 288,110 - -0.5 288,110 - +0.6 288,110 - +0.8 288,110 - -0.1 288,275 + -0.6 288,293 + -0.2 288,448 + GFF1637 0.33 +0.4 288,449 - GFF1637 0.33 -0.2 288,577 + GFF1637 0.60 -1.3 288,577 + GFF1637 0.60 +0.4 288,655 + GFF1637 0.77 +0.3 288,655 + GFF1637 0.77 +0.6 288,655 + GFF1637 0.77 -1.5 288,656 - GFF1637 0.77 +1.0 288,701 - GFF1637 0.87 +0.4 288,736 + +0.5 288,788 + -0.2 288,788 + -0.2 288,788 + +0.0 288,789 - +0.4 288,920 + GFF1638 0.30 -0.3 288,921 - GFF1638 0.30 +0.1 289,038 - GFF1638 0.53 +0.0 289,098 + GFF1638 0.65 +0.2 289,098 + GFF1638 0.65 -0.5 289,098 + GFF1638 0.65 -0.6 289,099 - GFF1638 0.65 -0.2 289,889 + GFF1640 0.15 +0.5 289,889 + GFF1640 0.15 -0.5 289,890 - GFF1640 0.15 -1.4 289,890 - GFF1640 0.15 +0.0
Or see this region's nucleotide sequence