Strain Fitness in Xanthobacter sp. DMC5 around GFF1629

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1627 and GFF1628 are separated by 67 nucleotidesGFF1628 and GFF1629 overlap by 1 nucleotidesGFF1629 and GFF1630 are separated by 551 nucleotidesGFF1630 and GFF1631 are separated by 10 nucleotides GFF1627 - hypothetical protein, at 276,100 to 276,327 GFF1627 GFF1628 - hypothetical protein, at 276,395 to 276,988 GFF1628 GFF1629 - hypothetical protein, at 276,988 to 279,570 GFF1629 GFF1630 - hypothetical protein, at 280,122 to 280,490 GFF1630 GFF1631 - hypothetical protein, at 280,501 to 280,803 GFF1631 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -1 0 1 2at 276.061 kb on + strandat 276.100 kb on - strandat 276.100 kb on - strandat 276.100 kb on - strandat 276.122 kb on + strandat 276.423 kb on - strandat 276.423 kb on - strandat 276.423 kb on - strandat 276.449 kb on + strandat 276.667 kb on - strand, within GFF1628at 276.740 kb on + strand, within GFF1628at 276.741 kb on - strand, within GFF1628at 276.741 kb on - strand, within GFF1628at 276.741 kb on - strand, within GFF1628at 276.741 kb on - strand, within GFF1628at 276.777 kb on - strand, within GFF1628at 276.787 kb on + strand, within GFF1628at 276.787 kb on + strand, within GFF1628at 276.787 kb on + strand, within GFF1628at 276.787 kb on + strand, within GFF1628at 276.787 kb on + strand, within GFF1628at 276.788 kb on - strand, within GFF1628at 277.046 kb on + strandat 277.047 kb on - strandat 277.047 kb on - strandat 277.336 kb on + strand, within GFF1629at 277.336 kb on + strand, within GFF1629at 277.337 kb on - strand, within GFF1629at 277.432 kb on + strand, within GFF1629at 277.433 kb on - strand, within GFF1629at 277.469 kb on + strand, within GFF1629at 277.469 kb on + strand, within GFF1629at 277.470 kb on - strand, within GFF1629at 277.470 kb on - strand, within GFF1629at 277.470 kb on - strand, within GFF1629at 277.470 kb on - strand, within GFF1629at 277.470 kb on - strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.471 kb on + strand, within GFF1629at 277.472 kb on - strand, within GFF1629at 277.472 kb on - strand, within GFF1629at 277.472 kb on - strand, within GFF1629at 277.472 kb on - strand, within GFF1629at 277.472 kb on - strand, within GFF1629at 277.472 kb on - strand, within GFF1629at 277.780 kb on + strand, within GFF1629at 278.212 kb on + strand, within GFF1629at 278.212 kb on + strand, within GFF1629at 278.213 kb on - strand, within GFF1629at 278.213 kb on - strand, within GFF1629at 278.213 kb on - strand, within GFF1629at 278.213 kb on - strand, within GFF1629at 278.213 kb on - strand, within GFF1629at 278.307 kb on - strand, within GFF1629at 278.307 kb on - strand, within GFF1629at 278.428 kb on + strand, within GFF1629at 278.428 kb on + strand, within GFF1629at 278.429 kb on - strand, within GFF1629at 278.429 kb on - strand, within GFF1629at 278.473 kb on - strand, within GFF1629at 278.569 kb on + strand, within GFF1629at 278.584 kb on - strand, within GFF1629at 278.584 kb on - strand, within GFF1629at 278.584 kb on - strand, within GFF1629at 278.622 kb on - strand, within GFF1629at 278.622 kb on - strand, within GFF1629at 278.991 kb on + strand, within GFF1629at 278.991 kb on + strand, within GFF1629at 278.991 kb on + strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 278.992 kb on - strand, within GFF1629at 279.275 kb on - strand, within GFF1629at 279.334 kb on + strandat 279.334 kb on + strandat 279.344 kb on + strandat 279.344 kb on + strandat 279.345 kb on - strandat 279.345 kb on - strandat 279.474 kb on + strandat 279.474 kb on + strandat 279.475 kb on - strandat 279.475 kb on - strandat 279.475 kb on - strandat 279.665 kb on - strandat 279.671 kb on + strandat 279.672 kb on - strandat 279.764 kb on + strandat 279.764 kb on + strandat 279.804 kb on - strandat 279.885 kb on - strandat 280.077 kb on - strandat 280.086 kb on + strandat 280.087 kb on - strandat 280.087 kb on - strandat 280.138 kb on + strandat 280.152 kb on + strandat 280.152 kb on + strandat 280.152 kb on + strandat 280.153 kb on - strandat 280.153 kb on - strandat 280.475 kb on + strandat 280.476 kb on - strandat 280.513 kb on + strandat 280.538 kb on + strand, within GFF1631at 280.538 kb on + strand, within GFF1631at 280.538 kb on + strand, within GFF1631

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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276,061 + +0.9
276,100 - +0.4
276,100 - +0.4
276,100 - +0.2
276,122 + +0.0
276,423 - +0.0
276,423 - -0.9
276,423 - -0.3
276,449 + +0.4
276,667 - GFF1628 0.46 -0.3
276,740 + GFF1628 0.58 +0.7
276,741 - GFF1628 0.58 -0.4
276,741 - GFF1628 0.58 -0.1
276,741 - GFF1628 0.58 +0.9
276,741 - GFF1628 0.58 +0.0
276,777 - GFF1628 0.64 -0.2
276,787 + GFF1628 0.66 -0.2
276,787 + GFF1628 0.66 +0.0
276,787 + GFF1628 0.66 +0.3
276,787 + GFF1628 0.66 -1.2
276,787 + GFF1628 0.66 +0.0
276,788 - GFF1628 0.66 +0.2
277,046 + -0.4
277,047 - -0.9
277,047 - -0.2
277,336 + GFF1629 0.13 -1.6
277,336 + GFF1629 0.13 +0.2
277,337 - GFF1629 0.14 +0.0
277,432 + GFF1629 0.17 +1.0
277,433 - GFF1629 0.17 +1.6
277,469 + GFF1629 0.19 +0.5
277,469 + GFF1629 0.19 +0.1
277,470 - GFF1629 0.19 -0.1
277,470 - GFF1629 0.19 -0.7
277,470 - GFF1629 0.19 -0.1
277,470 - GFF1629 0.19 -0.8
277,470 - GFF1629 0.19 +0.4
277,471 + GFF1629 0.19 +1.2
277,471 + GFF1629 0.19 +0.1
277,471 + GFF1629 0.19 -0.3
277,471 + GFF1629 0.19 -0.1
277,471 + GFF1629 0.19 -0.1
277,471 + GFF1629 0.19 +0.0
277,471 + GFF1629 0.19 +0.6
277,471 + GFF1629 0.19 -1.2
277,471 + GFF1629 0.19 -0.1
277,471 + GFF1629 0.19 +0.6
277,471 + GFF1629 0.19 +0.3
277,471 + GFF1629 0.19 +0.2
277,472 - GFF1629 0.19 -0.7
277,472 - GFF1629 0.19 -0.3
277,472 - GFF1629 0.19 +0.7
277,472 - GFF1629 0.19 -0.8
277,472 - GFF1629 0.19 -0.4
277,472 - GFF1629 0.19 -0.7
277,780 + GFF1629 0.31 -0.9
278,212 + GFF1629 0.47 -0.6
278,212 + GFF1629 0.47 -0.4
278,213 - GFF1629 0.47 -0.7
278,213 - GFF1629 0.47 +0.1
278,213 - GFF1629 0.47 -1.2
278,213 - GFF1629 0.47 +0.3
278,213 - GFF1629 0.47 -0.4
278,307 - GFF1629 0.51 -0.4
278,307 - GFF1629 0.51 -0.9
278,428 + GFF1629 0.56 -0.2
278,428 + GFF1629 0.56 +1.9
278,429 - GFF1629 0.56 -0.1
278,429 - GFF1629 0.56 -0.9
278,473 - GFF1629 0.57 -0.5
278,569 + GFF1629 0.61 +0.6
278,584 - GFF1629 0.62 -0.7
278,584 - GFF1629 0.62 +0.8
278,584 - GFF1629 0.62 -0.1
278,622 - GFF1629 0.63 -0.5
278,622 - GFF1629 0.63 +0.2
278,991 + GFF1629 0.78 +0.9
278,991 + GFF1629 0.78 +0.0
278,991 + GFF1629 0.78 -0.4
278,992 - GFF1629 0.78 -0.0
278,992 - GFF1629 0.78 -0.4
278,992 - GFF1629 0.78 -0.1
278,992 - GFF1629 0.78 +0.1
278,992 - GFF1629 0.78 +0.2
278,992 - GFF1629 0.78 -0.7
278,992 - GFF1629 0.78 -0.3
278,992 - GFF1629 0.78 -1.1
278,992 - GFF1629 0.78 +0.6
278,992 - GFF1629 0.78 +0.8
278,992 - GFF1629 0.78 +0.4
279,275 - GFF1629 0.89 +0.1
279,334 + +0.2
279,334 + +1.4
279,344 + +0.0
279,344 + -1.1
279,345 - +0.3
279,345 - +0.9
279,474 + +0.9
279,474 + -1.1
279,475 - -0.5
279,475 - +0.8
279,475 - -0.5
279,665 - +0.4
279,671 + -1.2
279,672 - -0.5
279,764 + -0.4
279,764 + -0.1
279,804 - +0.4
279,885 - +0.4
280,077 - -0.5
280,086 + -0.4
280,087 - -0.3
280,087 - +0.4
280,138 + +0.0
280,152 + -0.7
280,152 + -0.5
280,152 + +0.3
280,153 - +0.4
280,153 - +0.0
280,475 + +0.4
280,476 - -0.3
280,513 + -0.7
280,538 + GFF1631 0.12 -0.2
280,538 + GFF1631 0.12 -1.1
280,538 + GFF1631 0.12 -0.2

Or see this region's nucleotide sequence