Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1612 and GFF1613 are separated by 111 nucleotides GFF1613 and GFF1614 overlap by 4 nucleotides GFF1614 and GFF1615 are separated by 547 nucleotides
GFF1612 - hypothetical protein, at 263,055 to 263,720
GFF1612
GFF1613 - hypothetical protein, at 263,832 to 264,047
GFF1613
GFF1614 - hypothetical protein, at 264,044 to 264,283
GFF1614
GFF1615 - hypothetical protein, at 264,831 to 265,307
GFF1615
Position (kb) 264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 263.071 kb on + strand at 263.071 kb on + strand at 263.448 kb on + strand, within GFF1612 at 263.449 kb on - strand, within GFF1612 at 263.449 kb on - strand, within GFF1612 at 263.449 kb on - strand, within GFF1612 at 263.527 kb on - strand, within GFF1612 at 263.609 kb on - strand, within GFF1612 at 263.609 kb on - strand, within GFF1612 at 263.609 kb on - strand, within GFF1612 at 263.693 kb on - strand at 263.707 kb on + strand at 263.732 kb on - strand at 263.732 kb on - strand at 263.763 kb on - strand at 263.763 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.765 kb on - strand at 263.961 kb on + strand, within GFF1613 at 264.052 kb on + strand at 264.053 kb on - strand at 264.089 kb on + strand, within GFF1614 at 264.089 kb on + strand, within GFF1614 at 264.090 kb on - strand, within GFF1614 at 264.090 kb on - strand, within GFF1614 at 264.130 kb on + strand, within GFF1614 at 264.149 kb on + strand, within GFF1614 at 264.149 kb on + strand, within GFF1614 at 264.149 kb on + strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.150 kb on - strand, within GFF1614 at 264.291 kb on + strand at 264.292 kb on - strand at 264.297 kb on + strand at 264.298 kb on - strand at 264.298 kb on - strand at 264.591 kb on + strand at 264.592 kb on - strand at 264.646 kb on - strand at 264.646 kb on - strand at 264.748 kb on + strand at 264.749 kb on - strand at 264.749 kb on - strand at 264.749 kb on - strand at 264.749 kb on - strand at 264.764 kb on - strand at 264.940 kb on + strand, within GFF1615 at 265.200 kb on + strand, within GFF1615 at 265.212 kb on + strand, within GFF1615 at 265.212 kb on + strand, within GFF1615 at 265.213 kb on - strand, within GFF1615 at 265.255 kb on + strand, within GFF1615 at 265.255 kb on + strand, within GFF1615 at 265.256 kb on - strand, within GFF1615
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 263,071 + -0.9 263,071 + +0.3 263,448 + GFF1612 0.59 -0.5 263,449 - GFF1612 0.59 +1.6 263,449 - GFF1612 0.59 -0.8 263,449 - GFF1612 0.59 +1.1 263,527 - GFF1612 0.71 +0.1 263,609 - GFF1612 0.83 +0.2 263,609 - GFF1612 0.83 -0.3 263,609 - GFF1612 0.83 +0.4 263,693 - -0.4 263,707 + +0.9 263,732 - -0.5 263,732 - +0.2 263,763 - -0.5 263,763 - -0.8 263,765 - -0.7 263,765 - +0.2 263,765 - -0.6 263,765 - -0.9 263,765 - -0.3 263,961 + GFF1613 0.60 +0.2 264,052 + -0.1 264,053 - -0.2 264,089 + GFF1614 0.19 -1.2 264,089 + GFF1614 0.19 +0.9 264,090 - GFF1614 0.19 -0.7 264,090 - GFF1614 0.19 +0.7 264,130 + GFF1614 0.36 +0.0 264,149 + GFF1614 0.44 -0.4 264,149 + GFF1614 0.44 -0.0 264,149 + GFF1614 0.44 +0.1 264,150 - GFF1614 0.44 +0.3 264,150 - GFF1614 0.44 +0.4 264,150 - GFF1614 0.44 +0.3 264,150 - GFF1614 0.44 -0.6 264,150 - GFF1614 0.44 -0.0 264,291 + -0.2 264,292 - +0.1 264,297 + -0.4 264,298 - +0.1 264,298 - +0.3 264,591 + -0.4 264,592 - -0.7 264,646 - +0.4 264,646 - -0.2 264,748 + -0.5 264,749 - +0.3 264,749 - -0.3 264,749 - +0.3 264,749 - +0.0 264,764 - +0.6 264,940 + GFF1615 0.23 -0.3 265,200 + GFF1615 0.77 -0.1 265,212 + GFF1615 0.80 -1.2 265,212 + GFF1615 0.80 -0.6 265,213 - GFF1615 0.80 -2.1 265,255 + GFF1615 0.89 +0.5 265,255 + GFF1615 0.89 -0.3 265,256 - GFF1615 0.89 +0.5
Or see this region's nucleotide sequence