Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1608 and GFF1609 are separated by 135 nucleotides GFF1609 and GFF1610 are separated by 57 nucleotides
GFF1608 - Alcohol dehydrogenase [acceptor], at 258,400 to 260,055
GFF1608
GFF1609 - HTH-type transcriptional repressor RspR, at 260,191 to 260,922
GFF1609
GFF1610 - 2-hydroxy-3-oxopropionate reductase, at 260,980 to 261,927
GFF1610
Position (kb)
260
261 Strain fitness (log2 ratio)
-1
0
1
2 at 259.254 kb on + strand, within GFF1608 at 259.254 kb on + strand, within GFF1608 at 259.254 kb on + strand, within GFF1608 at 259.255 kb on - strand, within GFF1608 at 259.255 kb on - strand, within GFF1608 at 259.453 kb on - strand, within GFF1608 at 259.482 kb on - strand, within GFF1608 at 259.511 kb on + strand, within GFF1608 at 259.664 kb on + strand, within GFF1608 at 259.665 kb on - strand, within GFF1608 at 259.746 kb on - strand, within GFF1608 at 259.746 kb on - strand, within GFF1608 at 259.746 kb on - strand, within GFF1608 at 259.746 kb on - strand, within GFF1608 at 259.746 kb on - strand, within GFF1608 at 259.854 kb on - strand, within GFF1608 at 259.854 kb on - strand, within GFF1608 at 259.854 kb on - strand, within GFF1608 at 260.062 kb on - strand at 260.420 kb on + strand, within GFF1609 at 260.429 kb on + strand, within GFF1609 at 260.429 kb on + strand, within GFF1609 at 260.429 kb on + strand, within GFF1609 at 260.429 kb on + strand, within GFF1609 at 260.430 kb on - strand, within GFF1609 at 260.430 kb on - strand, within GFF1609 at 260.512 kb on + strand, within GFF1609 at 260.512 kb on + strand, within GFF1609 at 260.512 kb on + strand, within GFF1609 at 260.512 kb on + strand, within GFF1609 at 260.512 kb on + strand, within GFF1609 at 260.512 kb on + strand, within GFF1609 at 260.513 kb on - strand, within GFF1609 at 260.513 kb on - strand, within GFF1609 at 260.513 kb on - strand, within GFF1609 at 260.646 kb on + strand, within GFF1609 at 260.646 kb on + strand, within GFF1609 at 260.646 kb on + strand, within GFF1609 at 260.646 kb on + strand, within GFF1609 at 260.647 kb on - strand, within GFF1609 at 260.647 kb on - strand, within GFF1609 at 260.647 kb on - strand, within GFF1609 at 260.652 kb on + strand, within GFF1609 at 260.652 kb on + strand, within GFF1609 at 260.653 kb on - strand, within GFF1609 at 260.672 kb on - strand, within GFF1609 at 260.672 kb on - strand, within GFF1609 at 260.871 kb on + strand at 260.871 kb on + strand at 260.872 kb on - strand at 260.872 kb on - strand at 260.920 kb on + strand at 260.921 kb on - strand at 260.956 kb on + strand at 261.104 kb on + strand, within GFF1610 at 261.104 kb on + strand, within GFF1610 at 261.104 kb on + strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.105 kb on - strand, within GFF1610 at 261.135 kb on + strand, within GFF1610 at 261.568 kb on + strand, within GFF1610 at 261.568 kb on + strand, within GFF1610 at 261.569 kb on - strand, within GFF1610 at 261.569 kb on - strand, within GFF1610 at 261.652 kb on + strand, within GFF1610 at 261.682 kb on + strand, within GFF1610 at 261.682 kb on + strand, within GFF1610 at 261.683 kb on - strand, within GFF1610 at 261.683 kb on - strand, within GFF1610 at 261.725 kb on - strand, within GFF1610 at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.849 kb on + strand at 261.850 kb on - strand at 261.850 kb on - strand at 261.850 kb on - strand at 261.850 kb on - strand at 261.880 kb on + strand at 261.880 kb on + strand at 261.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 259,254 + GFF1608 0.52 -0.3 259,254 + GFF1608 0.52 -0.7 259,254 + GFF1608 0.52 -0.6 259,255 - GFF1608 0.52 -0.9 259,255 - GFF1608 0.52 -0.3 259,453 - GFF1608 0.64 +0.3 259,482 - GFF1608 0.65 +0.0 259,511 + GFF1608 0.67 -0.4 259,664 + GFF1608 0.76 +0.9 259,665 - GFF1608 0.76 +0.4 259,746 - GFF1608 0.81 -0.5 259,746 - GFF1608 0.81 -0.1 259,746 - GFF1608 0.81 -0.1 259,746 - GFF1608 0.81 -0.6 259,746 - GFF1608 0.81 +0.0 259,854 - GFF1608 0.88 +0.5 259,854 - GFF1608 0.88 -0.9 259,854 - GFF1608 0.88 +0.6 260,062 - -0.7 260,420 + GFF1609 0.31 +0.2 260,429 + GFF1609 0.33 +0.6 260,429 + GFF1609 0.33 +0.6 260,429 + GFF1609 0.33 +0.4 260,429 + GFF1609 0.33 +0.5 260,430 - GFF1609 0.33 +0.3 260,430 - GFF1609 0.33 +0.7 260,512 + GFF1609 0.44 +0.0 260,512 + GFF1609 0.44 +2.2 260,512 + GFF1609 0.44 +1.0 260,512 + GFF1609 0.44 +0.6 260,512 + GFF1609 0.44 +0.8 260,512 + GFF1609 0.44 +0.7 260,513 - GFF1609 0.44 +1.3 260,513 - GFF1609 0.44 +0.5 260,513 - GFF1609 0.44 +0.0 260,646 + GFF1609 0.62 +1.1 260,646 + GFF1609 0.62 +0.3 260,646 + GFF1609 0.62 -0.3 260,646 + GFF1609 0.62 +0.2 260,647 - GFF1609 0.62 +0.8 260,647 - GFF1609 0.62 -0.3 260,647 - GFF1609 0.62 +1.0 260,652 + GFF1609 0.63 +0.7 260,652 + GFF1609 0.63 +1.2 260,653 - GFF1609 0.63 +1.7 260,672 - GFF1609 0.66 +0.5 260,672 - GFF1609 0.66 -0.2 260,871 + +0.3 260,871 + +0.4 260,872 - +1.2 260,872 - +1.3 260,920 + +1.1 260,921 - +1.0 260,956 + +0.6 261,104 + GFF1610 0.13 -0.7 261,104 + GFF1610 0.13 +0.4 261,104 + GFF1610 0.13 +0.0 261,105 - GFF1610 0.13 -0.3 261,105 - GFF1610 0.13 +0.2 261,105 - GFF1610 0.13 -0.1 261,105 - GFF1610 0.13 +0.1 261,135 + GFF1610 0.16 -0.5 261,568 + GFF1610 0.62 +0.7 261,568 + GFF1610 0.62 -0.3 261,569 - GFF1610 0.62 +1.2 261,569 - GFF1610 0.62 -0.6 261,652 + GFF1610 0.71 -0.1 261,682 + GFF1610 0.74 -0.9 261,682 + GFF1610 0.74 +0.5 261,683 - GFF1610 0.74 -0.9 261,683 - GFF1610 0.74 +0.9 261,725 - GFF1610 0.79 -0.4 261,849 + +0.0 261,849 + -1.1 261,849 + +0.5 261,849 + +0.3 261,849 + +0.2 261,849 + +0.2 261,849 + -1.3 261,849 + +0.4 261,850 - -0.7 261,850 - -0.8 261,850 - +0.2 261,850 - -0.1 261,880 + +0.2 261,880 + -1.2 261,881 - -0.4
Or see this region's nucleotide sequence