Strain Fitness in Xanthobacter sp. DMC5 around GFF1609

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1608 and GFF1609 are separated by 135 nucleotidesGFF1609 and GFF1610 are separated by 57 nucleotides GFF1608 - Alcohol dehydrogenase [acceptor], at 258,400 to 260,055 GFF1608 GFF1609 - HTH-type transcriptional repressor RspR, at 260,191 to 260,922 GFF1609 GFF1610 - 2-hydroxy-3-oxopropionate reductase, at 260,980 to 261,927 GFF1610 Position (kb) 260 261Strain fitness (log2 ratio) -1 0 1 2at 259.254 kb on + strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.255 kb on - strand, within GFF1608at 259.255 kb on - strand, within GFF1608at 259.453 kb on - strand, within GFF1608at 259.482 kb on - strand, within GFF1608at 259.511 kb on + strand, within GFF1608at 259.664 kb on + strand, within GFF1608at 259.665 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.746 kb on - strand, within GFF1608at 259.854 kb on - strand, within GFF1608at 259.854 kb on - strand, within GFF1608at 259.854 kb on - strand, within GFF1608at 260.062 kb on - strandat 260.420 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.429 kb on + strand, within GFF1609at 260.430 kb on - strand, within GFF1609at 260.430 kb on - strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.512 kb on + strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.513 kb on - strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.646 kb on + strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.647 kb on - strand, within GFF1609at 260.652 kb on + strand, within GFF1609at 260.652 kb on + strand, within GFF1609at 260.653 kb on - strand, within GFF1609at 260.672 kb on - strand, within GFF1609at 260.672 kb on - strand, within GFF1609at 260.871 kb on + strandat 260.871 kb on + strandat 260.872 kb on - strandat 260.872 kb on - strandat 260.920 kb on + strandat 260.921 kb on - strandat 260.956 kb on + strandat 261.104 kb on + strand, within GFF1610at 261.104 kb on + strand, within GFF1610at 261.104 kb on + strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.105 kb on - strand, within GFF1610at 261.135 kb on + strand, within GFF1610at 261.568 kb on + strand, within GFF1610at 261.568 kb on + strand, within GFF1610at 261.569 kb on - strand, within GFF1610at 261.569 kb on - strand, within GFF1610at 261.652 kb on + strand, within GFF1610at 261.682 kb on + strand, within GFF1610at 261.682 kb on + strand, within GFF1610at 261.683 kb on - strand, within GFF1610at 261.683 kb on - strand, within GFF1610at 261.725 kb on - strand, within GFF1610at 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.849 kb on + strandat 261.850 kb on - strandat 261.850 kb on - strandat 261.850 kb on - strandat 261.850 kb on - strandat 261.880 kb on + strandat 261.880 kb on + strandat 261.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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259,254 + GFF1608 0.52 -0.3
259,254 + GFF1608 0.52 -0.7
259,254 + GFF1608 0.52 -0.6
259,255 - GFF1608 0.52 -0.9
259,255 - GFF1608 0.52 -0.3
259,453 - GFF1608 0.64 +0.3
259,482 - GFF1608 0.65 +0.0
259,511 + GFF1608 0.67 -0.4
259,664 + GFF1608 0.76 +0.9
259,665 - GFF1608 0.76 +0.4
259,746 - GFF1608 0.81 -0.5
259,746 - GFF1608 0.81 -0.1
259,746 - GFF1608 0.81 -0.1
259,746 - GFF1608 0.81 -0.6
259,746 - GFF1608 0.81 +0.0
259,854 - GFF1608 0.88 +0.5
259,854 - GFF1608 0.88 -0.9
259,854 - GFF1608 0.88 +0.6
260,062 - -0.7
260,420 + GFF1609 0.31 +0.2
260,429 + GFF1609 0.33 +0.6
260,429 + GFF1609 0.33 +0.6
260,429 + GFF1609 0.33 +0.4
260,429 + GFF1609 0.33 +0.5
260,430 - GFF1609 0.33 +0.3
260,430 - GFF1609 0.33 +0.7
260,512 + GFF1609 0.44 +0.0
260,512 + GFF1609 0.44 +2.2
260,512 + GFF1609 0.44 +1.0
260,512 + GFF1609 0.44 +0.6
260,512 + GFF1609 0.44 +0.8
260,512 + GFF1609 0.44 +0.7
260,513 - GFF1609 0.44 +1.3
260,513 - GFF1609 0.44 +0.5
260,513 - GFF1609 0.44 +0.0
260,646 + GFF1609 0.62 +1.1
260,646 + GFF1609 0.62 +0.3
260,646 + GFF1609 0.62 -0.3
260,646 + GFF1609 0.62 +0.2
260,647 - GFF1609 0.62 +0.8
260,647 - GFF1609 0.62 -0.3
260,647 - GFF1609 0.62 +1.0
260,652 + GFF1609 0.63 +0.7
260,652 + GFF1609 0.63 +1.2
260,653 - GFF1609 0.63 +1.7
260,672 - GFF1609 0.66 +0.5
260,672 - GFF1609 0.66 -0.2
260,871 + +0.3
260,871 + +0.4
260,872 - +1.2
260,872 - +1.3
260,920 + +1.1
260,921 - +1.0
260,956 + +0.6
261,104 + GFF1610 0.13 -0.7
261,104 + GFF1610 0.13 +0.4
261,104 + GFF1610 0.13 +0.0
261,105 - GFF1610 0.13 -0.3
261,105 - GFF1610 0.13 +0.2
261,105 - GFF1610 0.13 -0.1
261,105 - GFF1610 0.13 +0.1
261,135 + GFF1610 0.16 -0.5
261,568 + GFF1610 0.62 +0.7
261,568 + GFF1610 0.62 -0.3
261,569 - GFF1610 0.62 +1.2
261,569 - GFF1610 0.62 -0.6
261,652 + GFF1610 0.71 -0.1
261,682 + GFF1610 0.74 -0.9
261,682 + GFF1610 0.74 +0.5
261,683 - GFF1610 0.74 -0.9
261,683 - GFF1610 0.74 +0.9
261,725 - GFF1610 0.79 -0.4
261,849 + +0.0
261,849 + -1.1
261,849 + +0.5
261,849 + +0.3
261,849 + +0.2
261,849 + +0.2
261,849 + -1.3
261,849 + +0.4
261,850 - -0.7
261,850 - -0.8
261,850 - +0.2
261,850 - -0.1
261,880 + +0.2
261,880 + -1.2
261,881 - -0.4

Or see this region's nucleotide sequence