Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1584 and GFF1585 are separated by 291 nucleotides GFF1585 and GFF1586 are separated by 4 nucleotides GFF1586 and GFF1587 are separated by 36 nucleotides
GFF1584 - hypothetical protein, at 230,299 to 231,597
GFF1584
GFF1585 - 2-hydroxymuconate tautomerase, at 231,889 to 232,101
GFF1585
GFF1586 - Soluble epoxide hydrolase, at 232,106 to 233,011
GFF1586
GFF1587 - Long-chain-fatty-acid--CoA ligase, at 233,048 to 234,646
GFF1587
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1 at 231.131 kb on + strand, within GFF1584 at 231.132 kb on - strand, within GFF1584 at 231.150 kb on - strand, within GFF1584 at 231.194 kb on + strand, within GFF1584 at 231.194 kb on + strand, within GFF1584 at 231.194 kb on + strand, within GFF1584 at 231.195 kb on - strand, within GFF1584 at 231.472 kb on + strand at 231.472 kb on + strand at 231.473 kb on - strand at 231.473 kb on - strand at 231.591 kb on + strand at 231.591 kb on + strand at 231.592 kb on - strand at 231.676 kb on + strand at 231.677 kb on - strand at 231.924 kb on + strand, within GFF1585 at 231.925 kb on - strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.949 kb on + strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 231.950 kb on - strand, within GFF1585 at 232.115 kb on + strand at 232.116 kb on - strand at 232.128 kb on + strand at 232.181 kb on + strand at 232.182 kb on - strand at 232.182 kb on - strand at 232.284 kb on - strand, within GFF1586 at 232.319 kb on - strand, within GFF1586 at 232.641 kb on - strand, within GFF1586 at 232.714 kb on + strand, within GFF1586 at 232.757 kb on + strand, within GFF1586 at 232.757 kb on + strand, within GFF1586 at 232.757 kb on + strand, within GFF1586 at 232.757 kb on + strand, within GFF1586 at 232.898 kb on + strand, within GFF1586 at 232.898 kb on + strand, within GFF1586 at 232.899 kb on - strand, within GFF1586 at 232.952 kb on + strand at 232.952 kb on + strand at 232.952 kb on + strand at 232.952 kb on + strand at 232.952 kb on + strand at 233.154 kb on + strand at 233.154 kb on + strand at 233.154 kb on + strand at 233.154 kb on + strand at 233.155 kb on - strand at 233.155 kb on - strand at 233.155 kb on - strand at 233.155 kb on - strand at 233.155 kb on - strand at 233.155 kb on - strand at 233.228 kb on - strand, within GFF1587 at 233.305 kb on - strand, within GFF1587 at 233.305 kb on - strand, within GFF1587 at 233.305 kb on - strand, within GFF1587 at 233.383 kb on - strand, within GFF1587 at 233.388 kb on + strand, within GFF1587 at 233.388 kb on + strand, within GFF1587 at 233.388 kb on + strand, within GFF1587 at 233.388 kb on + strand, within GFF1587 at 233.389 kb on - strand, within GFF1587 at 233.389 kb on - strand, within GFF1587 at 233.475 kb on + strand, within GFF1587 at 233.476 kb on - strand, within GFF1587 at 233.476 kb on - strand, within GFF1587 at 233.661 kb on + strand, within GFF1587 at 233.661 kb on + strand, within GFF1587 at 233.662 kb on - strand, within GFF1587 at 233.662 kb on - strand, within GFF1587 at 233.739 kb on + strand, within GFF1587 at 233.784 kb on + strand, within GFF1587 at 233.785 kb on - strand, within GFF1587 at 233.785 kb on - strand, within GFF1587 at 233.836 kb on + strand, within GFF1587 at 233.973 kb on + strand, within GFF1587
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 231,131 + GFF1584 0.64 +0.3 231,132 - GFF1584 0.64 -0.7 231,150 - GFF1584 0.66 +0.3 231,194 + GFF1584 0.69 -0.3 231,194 + GFF1584 0.69 -0.5 231,194 + GFF1584 0.69 -0.8 231,195 - GFF1584 0.69 -0.2 231,472 + +0.0 231,472 + +0.6 231,473 - -0.6 231,473 - -0.6 231,591 + +0.1 231,591 + -1.5 231,592 - +0.1 231,676 + -0.4 231,677 - -0.4 231,924 + GFF1585 0.16 +0.8 231,925 - GFF1585 0.17 -0.2 231,949 + GFF1585 0.28 +0.3 231,949 + GFF1585 0.28 -0.5 231,949 + GFF1585 0.28 -0.3 231,949 + GFF1585 0.28 -0.9 231,949 + GFF1585 0.28 -0.2 231,949 + GFF1585 0.28 -0.7 231,950 - GFF1585 0.29 -0.2 231,950 - GFF1585 0.29 -0.7 231,950 - GFF1585 0.29 +0.1 231,950 - GFF1585 0.29 -0.6 232,115 + +0.2 232,116 - +0.2 232,128 + -0.8 232,181 + +0.7 232,182 - -0.1 232,182 - -0.1 232,284 - GFF1586 0.20 -1.0 232,319 - GFF1586 0.24 +0.2 232,641 - GFF1586 0.59 -0.9 232,714 + GFF1586 0.67 -1.8 232,757 + GFF1586 0.72 +0.7 232,757 + GFF1586 0.72 -0.6 232,757 + GFF1586 0.72 -0.0 232,757 + GFF1586 0.72 +0.9 232,898 + GFF1586 0.87 +0.1 232,898 + GFF1586 0.87 +0.4 232,899 - GFF1586 0.88 -1.0 232,952 + +0.5 232,952 + -2.0 232,952 + +0.6 232,952 + -1.2 232,952 + +0.6 233,154 + -1.0 233,154 + -0.3 233,154 + +0.0 233,154 + -0.8 233,155 - +1.5 233,155 - +0.2 233,155 - -0.4 233,155 - -0.6 233,155 - +0.5 233,155 - -0.8 233,228 - GFF1587 0.11 -1.0 233,305 - GFF1587 0.16 -0.6 233,305 - GFF1587 0.16 +0.1 233,305 - GFF1587 0.16 -1.2 233,383 - GFF1587 0.21 -0.4 233,388 + GFF1587 0.21 +0.5 233,388 + GFF1587 0.21 -1.3 233,388 + GFF1587 0.21 +0.5 233,388 + GFF1587 0.21 +0.0 233,389 - GFF1587 0.21 -0.3 233,389 - GFF1587 0.21 -0.5 233,475 + GFF1587 0.27 -1.2 233,476 - GFF1587 0.27 -0.1 233,476 - GFF1587 0.27 -0.3 233,661 + GFF1587 0.38 +0.1 233,661 + GFF1587 0.38 -0.2 233,662 - GFF1587 0.38 -0.9 233,662 - GFF1587 0.38 -0.6 233,739 + GFF1587 0.43 -1.0 233,784 + GFF1587 0.46 +0.5 233,785 - GFF1587 0.46 -0.4 233,785 - GFF1587 0.46 +0.0 233,836 + GFF1587 0.49 -0.3 233,973 + GFF1587 0.58 -0.9
Or see this region's nucleotide sequence