Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1577 and GFF1578 are separated by 995 nucleotides GFF1578 and GFF1579 are separated by 20 nucleotides GFF1579 and GFF1580 are separated by 13 nucleotides
GFF1577 - Glycerol dehydrogenase, at 223,157 to 224,245
GFF1577
GFF1578 - Apulose-4-phosphate transketolase subunit A, at 225,241 to 226,077
GFF1578
GFF1579 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 226,098 to 226,841
GFF1579
GFF1580 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 226,855 to 227,571
GFF1580
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 224.251 kb on + strand at 224.251 kb on + strand at 224.252 kb on - strand at 224.252 kb on - strand at 224.252 kb on - strand at 224.338 kb on + strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.413 kb on + strand at 224.413 kb on + strand at 224.731 kb on + strand at 224.731 kb on + strand at 224.732 kb on - strand at 224.867 kb on - strand at 224.974 kb on + strand at 224.974 kb on + strand at 224.974 kb on + strand at 224.974 kb on + strand at 224.975 kb on - strand at 224.975 kb on - strand at 224.975 kb on - strand at 224.975 kb on - strand at 224.986 kb on + strand at 224.987 kb on - strand at 225.058 kb on + strand at 225.058 kb on + strand at 225.059 kb on - strand at 225.059 kb on - strand at 225.091 kb on + strand at 225.103 kb on + strand at 225.104 kb on - strand at 225.104 kb on - strand at 225.242 kb on + strand at 225.242 kb on + strand at 225.328 kb on + strand, within GFF1578 at 225.329 kb on - strand, within GFF1578 at 225.329 kb on - strand, within GFF1578 at 225.329 kb on - strand, within GFF1578 at 225.785 kb on + strand, within GFF1578 at 225.785 kb on + strand, within GFF1578 at 225.785 kb on + strand, within GFF1578 at 225.851 kb on + strand, within GFF1578 at 225.869 kb on + strand, within GFF1578 at 225.869 kb on + strand, within GFF1578 at 225.869 kb on + strand, within GFF1578 at 225.975 kb on - strand, within GFF1578 at 226.008 kb on + strand at 226.008 kb on + strand at 226.008 kb on + strand at 226.008 kb on + strand at 226.008 kb on + strand at 226.009 kb on - strand at 226.111 kb on + strand at 226.112 kb on - strand at 226.147 kb on + strand at 226.147 kb on + strand at 226.148 kb on - strand at 226.148 kb on - strand at 226.148 kb on - strand at 226.387 kb on + strand, within GFF1579 at 226.387 kb on + strand, within GFF1579 at 226.388 kb on - strand, within GFF1579 at 226.388 kb on - strand, within GFF1579 at 226.544 kb on - strand, within GFF1579 at 226.832 kb on + strand at 226.832 kb on + strand at 226.832 kb on + strand at 226.833 kb on - strand at 226.833 kb on - strand at 226.833 kb on - strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.835 kb on + strand at 226.836 kb on - strand at 226.868 kb on + strand at 226.868 kb on + strand at 226.868 kb on + strand at 226.868 kb on + strand at 226.868 kb on + strand at 226.868 kb on + strand at 226.869 kb on - strand at 226.869 kb on - strand at 226.869 kb on - strand at 226.947 kb on - strand, within GFF1580
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 224,251 + +0.0 224,251 + +0.9 224,252 - +1.0 224,252 - -0.3 224,252 - +0.8 224,338 + +0.7 224,339 - +0.8 224,339 - +0.5 224,339 - -1.0 224,413 + +0.0 224,413 + -1.3 224,731 + +0.2 224,731 + +1.2 224,732 - +0.3 224,867 - +0.3 224,974 + +0.7 224,974 + +0.1 224,974 + +0.2 224,974 + +1.0 224,975 - +0.2 224,975 - -0.3 224,975 - +0.5 224,975 - -0.2 224,986 + -0.1 224,987 - -1.5 225,058 + -0.2 225,058 + +0.9 225,059 - +0.6 225,059 - +0.2 225,091 + -1.0 225,103 + +0.4 225,104 - -0.2 225,104 - +0.3 225,242 + +0.5 225,242 + -0.6 225,328 + GFF1578 0.10 +1.2 225,329 - GFF1578 0.11 -0.1 225,329 - GFF1578 0.11 -0.7 225,329 - GFF1578 0.11 -0.7 225,785 + GFF1578 0.65 +0.8 225,785 + GFF1578 0.65 +0.1 225,785 + GFF1578 0.65 -0.9 225,851 + GFF1578 0.73 -1.1 225,869 + GFF1578 0.75 -0.4 225,869 + GFF1578 0.75 -0.3 225,869 + GFF1578 0.75 -0.1 225,975 - GFF1578 0.88 +0.7 226,008 + -0.2 226,008 + +0.1 226,008 + +0.7 226,008 + -0.3 226,008 + +0.1 226,009 - +0.9 226,111 + +1.3 226,112 - -0.2 226,147 + -0.5 226,147 + -0.5 226,148 - +0.5 226,148 - +0.4 226,148 - -0.7 226,387 + GFF1579 0.39 -0.1 226,387 + GFF1579 0.39 +0.1 226,388 - GFF1579 0.39 -0.5 226,388 - GFF1579 0.39 +0.0 226,544 - GFF1579 0.60 -0.3 226,832 + -1.7 226,832 + -0.4 226,832 + +1.1 226,833 - -0.5 226,833 - -0.2 226,833 - -0.1 226,835 + +0.9 226,835 + +0.2 226,835 + +1.2 226,836 - +0.9 226,868 + -1.4 226,868 + -0.4 226,868 + +0.6 226,868 + -0.3 226,868 + +1.1 226,868 + +0.3 226,869 - +0.5 226,869 - -0.3 226,869 - +0.0 226,947 - GFF1580 0.13 -0.0
Or see this region's nucleotide sequence