Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1562 and GFF1563 are separated by 269 nucleotides GFF1563 and GFF1564 are separated by 6 nucleotides GFF1564 and GFF1565 overlap by 11 nucleotides
GFF1562 - Formamidase, at 201,525 to 202,751
GFF1562
GFF1563 - Transcriptional regulatory protein OmpR, at 203,021 to 203,731
GFF1563
GFF1564 - Sensor histidine kinase RcsC, at 203,738 to 204,901
GFF1564
GFF1565 - Adaptive-response sensory-kinase SasA, at 204,891 to 207,545
GFF1565
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1 at 202.839 kb on - strand at 202.839 kb on - strand at 202.851 kb on + strand at 202.851 kb on + strand at 202.852 kb on - strand at 202.886 kb on - strand at 202.938 kb on - strand at 203.300 kb on + strand, within GFF1563 at 203.300 kb on + strand, within GFF1563 at 203.300 kb on + strand, within GFF1563 at 203.300 kb on + strand, within GFF1563 at 203.300 kb on + strand, within GFF1563 at 203.300 kb on + strand, within GFF1563 at 203.301 kb on - strand, within GFF1563 at 203.301 kb on - strand, within GFF1563 at 203.301 kb on - strand, within GFF1563 at 203.301 kb on - strand, within GFF1563 at 203.301 kb on - strand, within GFF1563 at 203.702 kb on + strand at 203.702 kb on + strand at 203.702 kb on + strand at 203.702 kb on + strand at 203.703 kb on - strand at 203.703 kb on - strand at 203.703 kb on - strand at 203.703 kb on - strand at 203.703 kb on - strand at 203.703 kb on - strand at 203.967 kb on + strand, within GFF1564 at 203.968 kb on - strand, within GFF1564 at 203.968 kb on - strand, within GFF1564 at 204.380 kb on + strand, within GFF1564 at 204.380 kb on + strand, within GFF1564 at 204.380 kb on + strand, within GFF1564 at 204.381 kb on - strand, within GFF1564 at 204.381 kb on - strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.582 kb on + strand, within GFF1564 at 204.583 kb on - strand, within GFF1564 at 204.583 kb on - strand, within GFF1564 at 204.583 kb on - strand, within GFF1564 at 204.633 kb on + strand, within GFF1564 at 204.634 kb on - strand, within GFF1564 at 204.803 kb on + strand at 204.804 kb on - strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.810 kb on + strand at 204.811 kb on - strand at 204.811 kb on - strand at 205.780 kb on + strand, within GFF1565 at 205.781 kb on - strand, within GFF1565 at 205.781 kb on - strand, within GFF1565
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 202,839 - +0.2 202,839 - +0.1 202,851 + -0.1 202,851 + +0.2 202,852 - -0.4 202,886 - +0.1 202,938 - +0.6 203,300 + GFF1563 0.39 -0.8 203,300 + GFF1563 0.39 -0.5 203,300 + GFF1563 0.39 +1.1 203,300 + GFF1563 0.39 -0.5 203,300 + GFF1563 0.39 -0.3 203,300 + GFF1563 0.39 -0.2 203,301 - GFF1563 0.39 -0.1 203,301 - GFF1563 0.39 -0.9 203,301 - GFF1563 0.39 +0.4 203,301 - GFF1563 0.39 -1.7 203,301 - GFF1563 0.39 -0.5 203,702 + +0.9 203,702 + -0.2 203,702 + -0.4 203,702 + -2.3 203,703 - +0.3 203,703 - -0.5 203,703 - +0.3 203,703 - -0.5 203,703 - +1.5 203,703 - -0.4 203,967 + GFF1564 0.20 +0.7 203,968 - GFF1564 0.20 +0.5 203,968 - GFF1564 0.20 -0.6 204,380 + GFF1564 0.55 -1.1 204,380 + GFF1564 0.55 -1.7 204,380 + GFF1564 0.55 +0.2 204,381 - GFF1564 0.55 -1.4 204,381 - GFF1564 0.55 +1.0 204,582 + GFF1564 0.73 +1.4 204,582 + GFF1564 0.73 -0.6 204,582 + GFF1564 0.73 -0.6 204,582 + GFF1564 0.73 +0.2 204,582 + GFF1564 0.73 +0.6 204,582 + GFF1564 0.73 +0.4 204,582 + GFF1564 0.73 -1.1 204,582 + GFF1564 0.73 -0.3 204,583 - GFF1564 0.73 +0.5 204,583 - GFF1564 0.73 -0.2 204,583 - GFF1564 0.73 -1.4 204,633 + GFF1564 0.77 -0.5 204,634 - GFF1564 0.77 -1.3 204,803 + -0.9 204,804 - -0.6 204,810 + -0.2 204,810 + +0.6 204,810 + +0.3 204,810 + +0.9 204,810 + +0.5 204,810 + -1.4 204,810 + +0.9 204,810 + +0.5 204,811 - +0.6 204,811 - -1.2 205,780 + GFF1565 0.33 -1.1 205,781 - GFF1565 0.34 -0.3 205,781 - GFF1565 0.34 -0.1
Or see this region's nucleotide sequence