Strain Fitness in Xanthobacter sp. DMC5 around GFF1555

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1554 and GFF1555 are separated by 154 nucleotidesGFF1555 and GFF1556 are separated by 50 nucleotides GFF1554 - Inner membrane ABC transporter permease protein YcjO, at 192,802 to 193,662 GFF1554 GFF1555 - hypothetical protein, at 193,817 to 195,145 GFF1555 GFF1556 - Oligosaccharides import ATP-binding protein MsmX, at 195,196 to 196,290 GFF1556 Position (kb) 193 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 192.833 kb on + strandat 192.833 kb on + strandat 192.833 kb on + strandat 192.834 kb on - strandat 192.923 kb on + strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 192.924 kb on - strand, within GFF1554at 193.116 kb on - strand, within GFF1554at 193.161 kb on + strand, within GFF1554at 193.161 kb on + strand, within GFF1554at 193.190 kb on - strand, within GFF1554at 193.340 kb on + strand, within GFF1554at 193.341 kb on - strand, within GFF1554at 193.341 kb on - strand, within GFF1554at 193.369 kb on - strand, within GFF1554at 193.369 kb on - strand, within GFF1554at 193.434 kb on + strand, within GFF1554at 193.434 kb on + strand, within GFF1554at 193.435 kb on - strand, within GFF1554at 193.451 kb on + strand, within GFF1554at 193.508 kb on + strand, within GFF1554at 193.559 kb on + strand, within GFF1554at 193.560 kb on - strand, within GFF1554at 193.581 kb on - strandat 193.599 kb on + strandat 193.641 kb on - strandat 193.641 kb on - strandat 193.641 kb on - strandat 193.931 kb on + strandat 193.978 kb on - strand, within GFF1555at 194.014 kb on + strand, within GFF1555at 194.079 kb on + strand, within GFF1555at 194.079 kb on + strand, within GFF1555at 194.079 kb on + strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.080 kb on - strand, within GFF1555at 194.136 kb on + strand, within GFF1555at 194.136 kb on + strand, within GFF1555at 194.137 kb on - strand, within GFF1555at 194.137 kb on - strand, within GFF1555at 194.137 kb on - strand, within GFF1555at 194.214 kb on + strand, within GFF1555at 194.215 kb on - strand, within GFF1555at 194.215 kb on - strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.257 kb on - strand, within GFF1555at 194.257 kb on - strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.272 kb on - strand, within GFF1555at 194.272 kb on - strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.415 kb on + strand, within GFF1555at 194.416 kb on - strand, within GFF1555at 194.416 kb on - strand, within GFF1555at 194.439 kb on + strand, within GFF1555at 194.439 kb on + strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.701 kb on - strand, within GFF1555at 194.701 kb on - strand, within GFF1555at 194.706 kb on + strand, within GFF1555at 194.719 kb on - strand, within GFF1555at 194.763 kb on + strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.853 kb on + strand, within GFF1555at 194.949 kb on + strand, within GFF1555at 194.950 kb on - strand, within GFF1555at 194.950 kb on - strand, within GFF1555at 195.306 kb on + strand, within GFF1556at 195.306 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 196.014 kb on - strand, within GFF1556at 196.014 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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192,833 + +0.0
192,833 + +0.1
192,833 + +0.2
192,834 - -0.7
192,923 + GFF1554 0.14 +2.1
192,924 - GFF1554 0.14 -1.1
192,924 - GFF1554 0.14 +1.0
192,924 - GFF1554 0.14 +0.7
192,924 - GFF1554 0.14 -0.5
192,924 - GFF1554 0.14 +0.4
193,116 - GFF1554 0.36 +1.6
193,161 + GFF1554 0.42 +0.1
193,161 + GFF1554 0.42 +0.2
193,190 - GFF1554 0.45 -0.4
193,340 + GFF1554 0.62 -0.7
193,341 - GFF1554 0.63 -0.7
193,341 - GFF1554 0.63 -0.5
193,369 - GFF1554 0.66 +0.0
193,369 - GFF1554 0.66 -0.4
193,434 + GFF1554 0.73 +1.9
193,434 + GFF1554 0.73 -1.8
193,435 - GFF1554 0.74 -0.6
193,451 + GFF1554 0.75 +0.3
193,508 + GFF1554 0.82 +0.6
193,559 + GFF1554 0.88 -0.3
193,560 - GFF1554 0.88 +0.9
193,581 - -0.5
193,599 + +1.1
193,641 - +0.6
193,641 - +0.7
193,641 - +0.1
193,931 + +0.6
193,978 - GFF1555 0.12 -0.1
194,014 + GFF1555 0.15 -0.1
194,079 + GFF1555 0.20 -0.1
194,079 + GFF1555 0.20 -1.5
194,079 + GFF1555 0.20 -0.2
194,080 - GFF1555 0.20 -0.5
194,080 - GFF1555 0.20 -0.3
194,080 - GFF1555 0.20 +0.1
194,080 - GFF1555 0.20 +0.7
194,080 - GFF1555 0.20 +1.1
194,136 + GFF1555 0.24 -0.3
194,136 + GFF1555 0.24 +0.2
194,137 - GFF1555 0.24 +0.2
194,137 - GFF1555 0.24 +0.3
194,137 - GFF1555 0.24 +0.4
194,214 + GFF1555 0.30 -0.1
194,215 - GFF1555 0.30 +0.6
194,215 - GFF1555 0.30 +0.0
194,256 + GFF1555 0.33 -0.2
194,256 + GFF1555 0.33 -0.6
194,256 + GFF1555 0.33 +0.0
194,256 + GFF1555 0.33 -0.4
194,257 - GFF1555 0.33 -0.6
194,257 - GFF1555 0.33 +0.3
194,271 + GFF1555 0.34 +1.0
194,271 + GFF1555 0.34 -0.9
194,271 + GFF1555 0.34 -0.6
194,272 - GFF1555 0.34 -0.7
194,272 - GFF1555 0.34 -0.3
194,328 + GFF1555 0.38 +0.0
194,328 + GFF1555 0.38 -0.1
194,328 + GFF1555 0.38 -0.1
194,328 + GFF1555 0.38 +0.2
194,415 + GFF1555 0.45 +0.2
194,416 - GFF1555 0.45 +0.1
194,416 - GFF1555 0.45 -0.6
194,439 + GFF1555 0.47 -1.4
194,439 + GFF1555 0.47 -1.4
194,440 - GFF1555 0.47 -0.3
194,440 - GFF1555 0.47 -0.8
194,440 - GFF1555 0.47 +0.4
194,701 - GFF1555 0.67 +0.7
194,701 - GFF1555 0.67 -0.1
194,706 + GFF1555 0.67 -1.0
194,719 - GFF1555 0.68 +0.5
194,763 + GFF1555 0.71 +0.4
194,764 - GFF1555 0.71 +0.4
194,764 - GFF1555 0.71 +0.5
194,764 - GFF1555 0.71 -0.6
194,764 - GFF1555 0.71 -0.1
194,853 + GFF1555 0.78 -0.4
194,949 + GFF1555 0.85 -0.6
194,950 - GFF1555 0.85 +0.1
194,950 - GFF1555 0.85 +0.1
195,306 + GFF1556 0.10 -0.6
195,306 + GFF1556 0.10 -0.6
195,626 + GFF1556 0.39 -0.5
195,626 + GFF1556 0.39 -1.2
195,626 + GFF1556 0.39 -0.9
195,626 + GFF1556 0.39 +0.1
195,626 + GFF1556 0.39 +1.8
195,627 - GFF1556 0.39 -0.7
195,627 - GFF1556 0.39 -0.9
195,627 - GFF1556 0.39 -0.2
195,627 - GFF1556 0.39 -1.2
195,725 + GFF1556 0.48 +0.1
195,725 + GFF1556 0.48 -0.6
195,725 + GFF1556 0.48 +0.2
195,726 - GFF1556 0.48 -0.8
195,726 - GFF1556 0.48 +0.1
195,726 - GFF1556 0.48 +0.4
195,726 - GFF1556 0.48 +0.3
195,726 - GFF1556 0.48 +0.8
196,014 - GFF1556 0.75 -0.0
196,014 - GFF1556 0.75 -0.3
196,041 - GFF1556 0.77 -0.5
196,041 - GFF1556 0.77 -0.7
196,041 - GFF1556 0.77 -0.2
196,041 - GFF1556 0.77 -1.2
196,041 - GFF1556 0.77 -0.2

Or see this region's nucleotide sequence