Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF153 and GFF154 are separated by 7 nucleotides GFF154 and GFF155 are separated by 222 nucleotides GFF155 and GFF156 overlap by 4 nucleotides
GFF153 - hypothetical protein, at 163,681 to 164,616
GFF153
GFF154 - sugar efflux transporter, at 164,624 to 165,805
GFF154
GFF155 - hypothetical protein, at 166,028 to 166,534
GFF155
GFF156 - hypothetical protein, at 166,531 to 167,190
GFF156
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1 at 163.629 kb on - strand at 163.629 kb on - strand at 163.629 kb on - strand at 163.630 kb on + strand at 163.630 kb on + strand at 163.891 kb on + strand, within GFF153 at 163.891 kb on + strand, within GFF153 at 163.891 kb on + strand, within GFF153 at 163.892 kb on - strand, within GFF153 at 164.000 kb on - strand, within GFF153 at 164.023 kb on + strand, within GFF153 at 164.264 kb on - strand, within GFF153 at 164.264 kb on - strand, within GFF153 at 164.356 kb on + strand, within GFF153 at 164.356 kb on + strand, within GFF153 at 164.356 kb on + strand, within GFF153 at 164.357 kb on - strand, within GFF153 at 164.357 kb on - strand, within GFF153 at 164.357 kb on - strand, within GFF153 at 164.480 kb on - strand, within GFF153 at 164.497 kb on + strand, within GFF153 at 164.497 kb on + strand, within GFF153 at 164.498 kb on - strand, within GFF153 at 165.216 kb on + strand, within GFF154 at 165.561 kb on - strand, within GFF154 at 165.711 kb on + strand at 165.711 kb on + strand at 165.711 kb on + strand at 165.714 kb on + strand at 165.715 kb on - strand at 165.715 kb on - strand at 165.715 kb on - strand at 165.760 kb on + strand at 165.760 kb on + strand at 165.760 kb on + strand at 165.910 kb on - strand at 166.602 kb on - strand, within GFF156 at 166.602 kb on - strand, within GFF156 at 166.697 kb on + strand, within GFF156
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 163,629 - -0.3 163,629 - -0.1 163,629 - -0.3 163,630 + +0.1 163,630 + +0.0 163,891 + GFF153 0.22 +0.9 163,891 + GFF153 0.22 -0.9 163,891 + GFF153 0.22 -0.9 163,892 - GFF153 0.23 +0.9 164,000 - GFF153 0.34 -0.9 164,023 + GFF153 0.37 -0.4 164,264 - GFF153 0.62 -0.2 164,264 - GFF153 0.62 -0.0 164,356 + GFF153 0.72 -0.9 164,356 + GFF153 0.72 +0.3 164,356 + GFF153 0.72 +0.5 164,357 - GFF153 0.72 +0.6 164,357 - GFF153 0.72 -0.9 164,357 - GFF153 0.72 -1.8 164,480 - GFF153 0.85 -0.1 164,497 + GFF153 0.87 -0.2 164,497 + GFF153 0.87 -0.6 164,498 - GFF153 0.87 +1.4 165,216 + GFF154 0.50 -0.1 165,561 - GFF154 0.79 -1.3 165,711 + +0.4 165,711 + +1.4 165,711 + +1.0 165,714 + -1.2 165,715 - +0.2 165,715 - +0.5 165,715 - -0.4 165,760 + +0.9 165,760 + -0.4 165,760 + -1.0 165,910 - -0.6 166,602 - GFF156 0.11 -0.1 166,602 - GFF156 0.11 -0.3 166,697 + GFF156 0.25 -0.7
Or see this region's nucleotide sequence