Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1516 and GFF1517 are separated by 64 nucleotides GFF1517 and GFF1518 are separated by 290 nucleotides GFF1518 and GFF1519 overlap by 4 nucleotides
GFF1516 - P-loop guanosine triphosphatase YjiA, at 155,849 to 156,808
GFF1516
GFF1517 - hypothetical protein, at 156,873 to 157,367
GFF1517
GFF1518 - Orotidine 5'-phosphate decarboxylase, at 157,658 to 158,407
GFF1518
GFF1519 - Betaine aldehyde dehydrogenase, at 158,404 to 159,861
GFF1519
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1
2 at 156.810 kb on - strand at 156.814 kb on + strand at 156.815 kb on - strand at 157.002 kb on - strand, within GFF1517 at 157.156 kb on + strand, within GFF1517 at 157.156 kb on + strand, within GFF1517 at 157.157 kb on - strand, within GFF1517 at 157.186 kb on - strand, within GFF1517 at 157.285 kb on + strand, within GFF1517 at 157.285 kb on + strand, within GFF1517 at 157.285 kb on + strand, within GFF1517 at 157.355 kb on + strand at 157.381 kb on - strand at 157.576 kb on - strand at 157.621 kb on - strand at 157.788 kb on - strand, within GFF1518 at 157.874 kb on + strand, within GFF1518 at 157.874 kb on + strand, within GFF1518 at 157.875 kb on - strand, within GFF1518 at 158.369 kb on + strand at 158.370 kb on - strand at 158.758 kb on + strand, within GFF1519 at 158.758 kb on + strand, within GFF1519 at 158.758 kb on + strand, within GFF1519 at 158.758 kb on + strand, within GFF1519 at 158.759 kb on - strand, within GFF1519 at 158.759 kb on - strand, within GFF1519 at 158.761 kb on + strand, within GFF1519 at 159.234 kb on - strand, within GFF1519
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 156,810 - +1.0 156,814 + +0.4 156,815 - -0.1 157,002 - GFF1517 0.26 +0.9 157,156 + GFF1517 0.57 +0.2 157,156 + GFF1517 0.57 -0.2 157,157 - GFF1517 0.57 -0.3 157,186 - GFF1517 0.63 -0.6 157,285 + GFF1517 0.83 -0.2 157,285 + GFF1517 0.83 -0.3 157,285 + GFF1517 0.83 -0.3 157,355 + -0.6 157,381 - -0.5 157,576 - +1.5 157,621 - -0.0 157,788 - GFF1518 0.17 -0.1 157,874 + GFF1518 0.29 +0.2 157,874 + GFF1518 0.29 -0.3 157,875 - GFF1518 0.29 -1.4 158,369 + -0.3 158,370 - -0.3 158,758 + GFF1519 0.24 -0.2 158,758 + GFF1519 0.24 +0.0 158,758 + GFF1519 0.24 +0.4 158,758 + GFF1519 0.24 -1.2 158,759 - GFF1519 0.24 -0.8 158,759 - GFF1519 0.24 +1.2 158,761 + GFF1519 0.24 +1.6 159,234 - GFF1519 0.57 +1.9
Or see this region's nucleotide sequence