Strain Fitness in Xanthobacter sp. DMC5 around GFF1512

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1511 and GFF1512 are separated by 130 nucleotidesGFF1512 and GFF1513 are separated by 218 nucleotides GFF1511 - HTH-type transcriptional regulator HdfR, at 149,050 to 149,943 GFF1511 GFF1512 - Alcohol dehydrogenase [acceptor], at 150,074 to 151,714 GFF1512 GFF1513 - Long-chain-fatty-acid--CoA ligase, at 151,933 to 153,465 GFF1513 Position (kb) 150 151 152Strain fitness (log2 ratio) -2 -1 0 1 2at 149.160 kb on - strand, within GFF1511at 149.208 kb on + strand, within GFF1511at 149.208 kb on + strand, within GFF1511at 149.208 kb on + strand, within GFF1511at 149.208 kb on + strand, within GFF1511at 149.209 kb on - strand, within GFF1511at 149.209 kb on - strand, within GFF1511at 149.209 kb on - strand, within GFF1511at 149.372 kb on + strand, within GFF1511at 149.372 kb on + strand, within GFF1511at 149.372 kb on + strand, within GFF1511at 149.373 kb on - strand, within GFF1511at 149.373 kb on - strand, within GFF1511at 149.435 kb on + strand, within GFF1511at 149.450 kb on + strand, within GFF1511at 149.450 kb on + strand, within GFF1511at 149.450 kb on + strand, within GFF1511at 149.465 kb on + strand, within GFF1511at 149.553 kb on - strand, within GFF1511at 149.553 kb on - strand, within GFF1511at 149.630 kb on + strand, within GFF1511at 149.631 kb on - strand, within GFF1511at 150.095 kb on + strandat 150.096 kb on - strandat 150.096 kb on - strandat 150.096 kb on - strandat 150.101 kb on + strandat 150.101 kb on + strandat 150.102 kb on - strandat 150.102 kb on - strandat 150.103 kb on + strandat 150.103 kb on + strandat 150.103 kb on + strandat 150.104 kb on - strandat 150.104 kb on - strandat 150.318 kb on - strand, within GFF1512at 150.369 kb on - strand, within GFF1512at 150.392 kb on + strand, within GFF1512at 150.392 kb on + strand, within GFF1512at 150.393 kb on - strand, within GFF1512at 150.632 kb on + strand, within GFF1512at 150.632 kb on + strand, within GFF1512at 150.633 kb on - strand, within GFF1512at 150.653 kb on + strand, within GFF1512at 150.653 kb on + strand, within GFF1512at 150.654 kb on - strand, within GFF1512at 150.654 kb on - strand, within GFF1512at 150.983 kb on + strand, within GFF1512at 150.984 kb on - strand, within GFF1512at 150.984 kb on - strand, within GFF1512at 150.984 kb on - strand, within GFF1512at 150.984 kb on - strand, within GFF1512at 151.019 kb on + strand, within GFF1512at 151.019 kb on + strand, within GFF1512at 151.019 kb on + strand, within GFF1512at 151.019 kb on + strand, within GFF1512at 151.022 kb on + strand, within GFF1512at 151.022 kb on + strand, within GFF1512at 151.059 kb on - strand, within GFF1512at 151.310 kb on + strand, within GFF1512at 151.311 kb on - strand, within GFF1512at 151.311 kb on - strand, within GFF1512at 151.397 kb on + strand, within GFF1512at 151.412 kb on + strand, within GFF1512at 151.412 kb on + strand, within GFF1512at 151.413 kb on - strand, within GFF1512at 151.413 kb on - strand, within GFF1512at 151.413 kb on - strand, within GFF1512at 151.413 kb on - strand, within GFF1512at 151.413 kb on - strand, within GFF1512at 151.606 kb on + strandat 151.607 kb on - strandat 151.607 kb on - strandat 151.630 kb on + strandat 151.631 kb on - strandat 151.631 kb on - strandat 151.631 kb on - strandat 151.906 kb on + strandat 151.935 kb on - strandat 152.000 kb on + strandat 152.000 kb on + strandat 152.000 kb on + strandat 152.000 kb on + strandat 152.001 kb on - strandat 152.001 kb on - strandat 152.001 kb on - strandat 152.018 kb on + strandat 152.240 kb on + strand, within GFF1513at 152.241 kb on - strand, within GFF1513at 152.516 kb on + strand, within GFF1513at 152.516 kb on + strand, within GFF1513at 152.517 kb on - strand, within GFF1513at 152.517 kb on - strand, within GFF1513at 152.517 kb on - strand, within GFF1513at 152.517 kb on - strand, within GFF1513at 152.549 kb on + strand, within GFF1513at 152.663 kb on + strand, within GFF1513at 152.663 kb on + strand, within GFF1513at 152.664 kb on - strand, within GFF1513at 152.664 kb on - strand, within GFF1513at 152.664 kb on - strand, within GFF1513

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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149,160 - GFF1511 0.12 -0.2
149,208 + GFF1511 0.18 +0.8
149,208 + GFF1511 0.18 -0.5
149,208 + GFF1511 0.18 -0.6
149,208 + GFF1511 0.18 -0.1
149,209 - GFF1511 0.18 +1.8
149,209 - GFF1511 0.18 +0.0
149,209 - GFF1511 0.18 -0.5
149,372 + GFF1511 0.36 +0.1
149,372 + GFF1511 0.36 -1.4
149,372 + GFF1511 0.36 +0.1
149,373 - GFF1511 0.36 +0.7
149,373 - GFF1511 0.36 +0.5
149,435 + GFF1511 0.43 +0.5
149,450 + GFF1511 0.45 -0.3
149,450 + GFF1511 0.45 -0.4
149,450 + GFF1511 0.45 -0.7
149,465 + GFF1511 0.46 +0.1
149,553 - GFF1511 0.56 +1.4
149,553 - GFF1511 0.56 +0.1
149,630 + GFF1511 0.65 +0.3
149,631 - GFF1511 0.65 -0.8
150,095 + +1.0
150,096 - +0.9
150,096 - +0.4
150,096 - -0.2
150,101 + +0.0
150,101 + +1.0
150,102 - -0.6
150,102 - +0.6
150,103 + +0.3
150,103 + -0.2
150,103 + +1.2
150,104 - +0.1
150,104 - -0.6
150,318 - GFF1512 0.15 +0.6
150,369 - GFF1512 0.18 -1.5
150,392 + GFF1512 0.19 +0.1
150,392 + GFF1512 0.19 -0.3
150,393 - GFF1512 0.19 -2.1
150,632 + GFF1512 0.34 +0.4
150,632 + GFF1512 0.34 -0.2
150,633 - GFF1512 0.34 -0.3
150,653 + GFF1512 0.35 -1.0
150,653 + GFF1512 0.35 -1.5
150,654 - GFF1512 0.35 +0.9
150,654 - GFF1512 0.35 -0.8
150,983 + GFF1512 0.55 +0.1
150,984 - GFF1512 0.55 +0.5
150,984 - GFF1512 0.55 +0.6
150,984 - GFF1512 0.55 -1.4
150,984 - GFF1512 0.55 +1.2
151,019 + GFF1512 0.58 +1.1
151,019 + GFF1512 0.58 -0.4
151,019 + GFF1512 0.58 +1.0
151,019 + GFF1512 0.58 +1.1
151,022 + GFF1512 0.58 +0.4
151,022 + GFF1512 0.58 -0.1
151,059 - GFF1512 0.60 -0.0
151,310 + GFF1512 0.75 -0.8
151,311 - GFF1512 0.75 +0.9
151,311 - GFF1512 0.75 -0.1
151,397 + GFF1512 0.81 -0.7
151,412 + GFF1512 0.82 +0.1
151,412 + GFF1512 0.82 +0.2
151,413 - GFF1512 0.82 -1.3
151,413 - GFF1512 0.82 -0.4
151,413 - GFF1512 0.82 +0.3
151,413 - GFF1512 0.82 -1.3
151,413 - GFF1512 0.82 +0.5
151,606 + -0.1
151,607 - -0.2
151,607 - +0.0
151,630 + -0.7
151,631 - +0.1
151,631 - +0.3
151,631 - -0.3
151,906 + +0.3
151,935 - -0.3
152,000 + -1.1
152,000 + +0.2
152,000 + +1.0
152,000 + -0.4
152,001 - +0.4
152,001 - +0.5
152,001 - -0.6
152,018 + -1.1
152,240 + GFF1513 0.20 -0.4
152,241 - GFF1513 0.20 -0.1
152,516 + GFF1513 0.38 +0.4
152,516 + GFF1513 0.38 -0.0
152,517 - GFF1513 0.38 -1.0
152,517 - GFF1513 0.38 +1.1
152,517 - GFF1513 0.38 +0.4
152,517 - GFF1513 0.38 +0.1
152,549 + GFF1513 0.40 +0.8
152,663 + GFF1513 0.48 -0.5
152,663 + GFF1513 0.48 +1.1
152,664 - GFF1513 0.48 +0.3
152,664 - GFF1513 0.48 +0.2
152,664 - GFF1513 0.48 -1.2

Or see this region's nucleotide sequence