Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1509 and GFF1510 are separated by 96 nucleotides GFF1510 and GFF1511 overlap by 14 nucleotides GFF1511 and GFF1512 are separated by 130 nucleotides
GFF1509 - Putative 3-oxopropanoate dehydrogenase, at 146,565 to 148,064
GFF1509
GFF1510 - HTH-type transcriptional regulator DmlR, at 148,161 to 149,063
GFF1510
GFF1511 - HTH-type transcriptional regulator HdfR, at 149,050 to 149,943
GFF1511
GFF1512 - Alcohol dehydrogenase [acceptor], at 150,074 to 151,714
GFF1512
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.483 kb on - strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.762 kb on - strand, within GFF1510 at 148.762 kb on - strand, within GFF1510 at 148.762 kb on - strand, within GFF1510 at 148.779 kb on + strand, within GFF1510 at 148.780 kb on - strand, within GFF1510 at 148.899 kb on + strand, within GFF1510 at 148.900 kb on - strand, within GFF1510 at 148.900 kb on - strand, within GFF1510 at 148.902 kb on + strand, within GFF1510 at 149.160 kb on - strand, within GFF1511 at 149.208 kb on + strand, within GFF1511 at 149.208 kb on + strand, within GFF1511 at 149.208 kb on + strand, within GFF1511 at 149.208 kb on + strand, within GFF1511 at 149.209 kb on - strand, within GFF1511 at 149.209 kb on - strand, within GFF1511 at 149.209 kb on - strand, within GFF1511 at 149.372 kb on + strand, within GFF1511 at 149.372 kb on + strand, within GFF1511 at 149.372 kb on + strand, within GFF1511 at 149.373 kb on - strand, within GFF1511 at 149.373 kb on - strand, within GFF1511 at 149.435 kb on + strand, within GFF1511 at 149.450 kb on + strand, within GFF1511 at 149.450 kb on + strand, within GFF1511 at 149.450 kb on + strand, within GFF1511 at 149.465 kb on + strand, within GFF1511 at 149.553 kb on - strand, within GFF1511 at 149.553 kb on - strand, within GFF1511 at 149.630 kb on + strand, within GFF1511 at 149.631 kb on - strand, within GFF1511 at 150.095 kb on + strand at 150.096 kb on - strand at 150.096 kb on - strand at 150.096 kb on - strand at 150.101 kb on + strand at 150.101 kb on + strand at 150.102 kb on - strand at 150.102 kb on - strand at 150.103 kb on + strand at 150.103 kb on + strand at 150.103 kb on + strand at 150.104 kb on - strand at 150.104 kb on - strand at 150.318 kb on - strand, within GFF1512 at 150.369 kb on - strand, within GFF1512 at 150.392 kb on + strand, within GFF1512 at 150.392 kb on + strand, within GFF1512 at 150.393 kb on - strand, within GFF1512 at 150.632 kb on + strand, within GFF1512 at 150.632 kb on + strand, within GFF1512 at 150.633 kb on - strand, within GFF1512 at 150.653 kb on + strand, within GFF1512 at 150.653 kb on + strand, within GFF1512 at 150.654 kb on - strand, within GFF1512 at 150.654 kb on - strand, within GFF1512
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 148,483 - GFF1510 0.36 -0.1 148,680 + GFF1510 0.57 +0.2 148,680 + GFF1510 0.57 +0.1 148,680 + GFF1510 0.57 -0.8 148,680 + GFF1510 0.57 +0.2 148,762 - GFF1510 0.67 -0.9 148,762 - GFF1510 0.67 +0.1 148,762 - GFF1510 0.67 +0.2 148,779 + GFF1510 0.68 -0.1 148,780 - GFF1510 0.69 -0.2 148,899 + GFF1510 0.82 -0.3 148,900 - GFF1510 0.82 -0.7 148,900 - GFF1510 0.82 -0.8 148,902 + GFF1510 0.82 -1.5 149,160 - GFF1511 0.12 -0.2 149,208 + GFF1511 0.18 +0.8 149,208 + GFF1511 0.18 -0.5 149,208 + GFF1511 0.18 -0.6 149,208 + GFF1511 0.18 -0.1 149,209 - GFF1511 0.18 +1.8 149,209 - GFF1511 0.18 +0.0 149,209 - GFF1511 0.18 -0.5 149,372 + GFF1511 0.36 +0.1 149,372 + GFF1511 0.36 -1.4 149,372 + GFF1511 0.36 +0.1 149,373 - GFF1511 0.36 +0.7 149,373 - GFF1511 0.36 +0.5 149,435 + GFF1511 0.43 +0.5 149,450 + GFF1511 0.45 -0.3 149,450 + GFF1511 0.45 -0.4 149,450 + GFF1511 0.45 -0.7 149,465 + GFF1511 0.46 +0.1 149,553 - GFF1511 0.56 +1.4 149,553 - GFF1511 0.56 +0.1 149,630 + GFF1511 0.65 +0.3 149,631 - GFF1511 0.65 -0.8 150,095 + +1.0 150,096 - +0.9 150,096 - +0.4 150,096 - -0.2 150,101 + +0.0 150,101 + +1.0 150,102 - -0.6 150,102 - +0.6 150,103 + +0.3 150,103 + -0.2 150,103 + +1.2 150,104 - +0.1 150,104 - -0.6 150,318 - GFF1512 0.15 +0.6 150,369 - GFF1512 0.18 -1.5 150,392 + GFF1512 0.19 +0.1 150,392 + GFF1512 0.19 -0.3 150,393 - GFF1512 0.19 -2.1 150,632 + GFF1512 0.34 +0.4 150,632 + GFF1512 0.34 -0.2 150,633 - GFF1512 0.34 -0.3 150,653 + GFF1512 0.35 -1.0 150,653 + GFF1512 0.35 -1.5 150,654 - GFF1512 0.35 +0.9 150,654 - GFF1512 0.35 -0.8
Or see this region's nucleotide sequence