Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1501 and GFF1502 overlap by 4 nucleotides GFF1502 and GFF1503 overlap by 4 nucleotides GFF1503 and GFF1504 are separated by 5 nucleotides
GFF1501 - Riboflavin-binding protein RibY, at 139,726 to 140,748
GFF1501
GFF1502 - hypothetical protein, at 140,745 to 141,551
GFF1502
GFF1503 - Riboflavin transport system permease protein RibX, at 141,548 to 142,300
GFF1503
GFF1504 - Nitrilotriacetate monooxygenase component A, at 142,306 to 143,604
GFF1504
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 140.899 kb on - strand, within GFF1502 at 140.953 kb on - strand, within GFF1502 at 141.177 kb on + strand, within GFF1502 at 141.187 kb on - strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.430 kb on - strand, within GFF1502 at 141.430 kb on - strand, within GFF1502 at 141.495 kb on + strand at 141.496 kb on - strand at 141.655 kb on + strand, within GFF1503 at 141.655 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.729 kb on - strand, within GFF1503 at 141.729 kb on - strand, within GFF1503 at 141.729 kb on - strand, within GFF1503 at 141.756 kb on - strand, within GFF1503 at 142.175 kb on + strand, within GFF1503 at 142.175 kb on + strand, within GFF1503 at 142.175 kb on + strand, within GFF1503 at 142.175 kb on + strand, within GFF1503 at 142.175 kb on + strand, within GFF1503 at 142.176 kb on - strand, within GFF1503 at 142.176 kb on - strand, within GFF1503 at 142.176 kb on - strand, within GFF1503 at 142.176 kb on - strand, within GFF1503 at 142.298 kb on + strand at 142.298 kb on + strand at 142.299 kb on - strand at 142.299 kb on - strand at 142.299 kb on - strand at 142.504 kb on + strand, within GFF1504 at 142.504 kb on + strand, within GFF1504 at 142.504 kb on + strand, within GFF1504 at 142.505 kb on - strand, within GFF1504 at 142.594 kb on + strand, within GFF1504 at 142.594 kb on + strand, within GFF1504 at 142.594 kb on + strand, within GFF1504 at 142.594 kb on + strand, within GFF1504 at 142.594 kb on + strand, within GFF1504 at 142.594 kb on + strand, within GFF1504 at 142.595 kb on - strand, within GFF1504 at 142.595 kb on - strand, within GFF1504 at 142.606 kb on + strand, within GFF1504 at 142.607 kb on - strand, within GFF1504 at 142.738 kb on + strand, within GFF1504 at 142.831 kb on + strand, within GFF1504 at 142.832 kb on - strand, within GFF1504 at 142.832 kb on - strand, within GFF1504 at 142.832 kb on - strand, within GFF1504 at 142.832 kb on - strand, within GFF1504 at 142.832 kb on - strand, within GFF1504 at 142.833 kb on + strand, within GFF1504 at 143.035 kb on + strand, within GFF1504 at 143.035 kb on + strand, within GFF1504 at 143.230 kb on + strand, within GFF1504 at 143.230 kb on + strand, within GFF1504 at 143.230 kb on + strand, within GFF1504 at 143.231 kb on - strand, within GFF1504 at 143.275 kb on + strand, within GFF1504 at 143.275 kb on + strand, within GFF1504 at 143.275 kb on + strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504 at 143.276 kb on - strand, within GFF1504
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 140,899 - GFF1502 0.19 +0.3 140,953 - GFF1502 0.26 +0.8 141,177 + GFF1502 0.54 +0.2 141,187 - GFF1502 0.55 +0.3 141,429 + GFF1502 0.85 +0.0 141,429 + GFF1502 0.85 +0.4 141,429 + GFF1502 0.85 -2.0 141,429 + GFF1502 0.85 -1.0 141,430 - GFF1502 0.85 +0.5 141,430 - GFF1502 0.85 +0.0 141,495 + +0.2 141,496 - +0.0 141,655 + GFF1503 0.14 -0.5 141,655 + GFF1503 0.14 +0.4 141,728 + GFF1503 0.24 +0.4 141,728 + GFF1503 0.24 -0.2 141,728 + GFF1503 0.24 -0.8 141,728 + GFF1503 0.24 +0.3 141,729 - GFF1503 0.24 -0.4 141,729 - GFF1503 0.24 -0.0 141,729 - GFF1503 0.24 -1.4 141,756 - GFF1503 0.28 -0.6 142,175 + GFF1503 0.83 +0.8 142,175 + GFF1503 0.83 -0.2 142,175 + GFF1503 0.83 -1.1 142,175 + GFF1503 0.83 -0.8 142,175 + GFF1503 0.83 -0.2 142,176 - GFF1503 0.83 +0.0 142,176 - GFF1503 0.83 -0.2 142,176 - GFF1503 0.83 -0.9 142,176 - GFF1503 0.83 -0.1 142,298 + +0.2 142,298 + +0.7 142,299 - +1.0 142,299 - -0.9 142,299 - +0.4 142,504 + GFF1504 0.15 -0.1 142,504 + GFF1504 0.15 -0.6 142,504 + GFF1504 0.15 +0.2 142,505 - GFF1504 0.15 +0.3 142,594 + GFF1504 0.22 -0.4 142,594 + GFF1504 0.22 -0.6 142,594 + GFF1504 0.22 +0.6 142,594 + GFF1504 0.22 +0.4 142,594 + GFF1504 0.22 -0.7 142,594 + GFF1504 0.22 +1.3 142,595 - GFF1504 0.22 +1.6 142,595 - GFF1504 0.22 +0.6 142,606 + GFF1504 0.23 +0.6 142,607 - GFF1504 0.23 +0.7 142,738 + GFF1504 0.33 -0.2 142,831 + GFF1504 0.40 -0.4 142,832 - GFF1504 0.40 +0.3 142,832 - GFF1504 0.40 +0.5 142,832 - GFF1504 0.40 -1.2 142,832 - GFF1504 0.40 -0.4 142,832 - GFF1504 0.40 -2.3 142,833 + GFF1504 0.41 +0.6 143,035 + GFF1504 0.56 +0.1 143,035 + GFF1504 0.56 +1.0 143,230 + GFF1504 0.71 -0.8 143,230 + GFF1504 0.71 -0.3 143,230 + GFF1504 0.71 -2.0 143,231 - GFF1504 0.71 +0.6 143,275 + GFF1504 0.75 -0.4 143,275 + GFF1504 0.75 -0.4 143,275 + GFF1504 0.75 +0.3 143,276 - GFF1504 0.75 -0.7 143,276 - GFF1504 0.75 +0.1 143,276 - GFF1504 0.75 +0.7 143,276 - GFF1504 0.75 -0.1 143,276 - GFF1504 0.75 +0.3 143,276 - GFF1504 0.75 -0.5 143,276 - GFF1504 0.75 +0.1 143,276 - GFF1504 0.75 -0.7
Or see this region's nucleotide sequence