Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1483 and GFF1484 are separated by 18 nucleotides GFF1484 and GFF1485 overlap by 1 nucleotides GFF1485 and GFF1486 overlap by 4 nucleotides
GFF1483 - Multidrug export protein AcrF, at 119,436 to 122,501
GFF1483
GFF1484 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 122,520 to 123,587
GFF1484
GFF1485 - Lactose transport system permease protein LacG, at 123,587 to 124,453
GFF1485
GFF1486 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 124,450 to 125,331
GFF1486
Position (kb) 122
123
124 Strain fitness (log2 ratio) -1
0
1 at 121.671 kb on + strand, within GFF1483 at 121.671 kb on + strand, within GFF1483 at 121.671 kb on + strand, within GFF1483 at 121.671 kb on + strand, within GFF1483 at 121.672 kb on - strand, within GFF1483 at 121.672 kb on - strand, within GFF1483 at 121.672 kb on - strand, within GFF1483 at 122.379 kb on + strand at 122.380 kb on - strand at 122.442 kb on + strand at 122.442 kb on + strand at 122.443 kb on - strand at 122.443 kb on - strand at 122.443 kb on - strand at 122.923 kb on + strand, within GFF1484 at 122.924 kb on - strand, within GFF1484 at 122.924 kb on - strand, within GFF1484 at 123.022 kb on + strand, within GFF1484 at 123.022 kb on + strand, within GFF1484 at 123.023 kb on - strand, within GFF1484 at 123.023 kb on - strand, within GFF1484 at 123.295 kb on + strand, within GFF1484 at 123.296 kb on - strand, within GFF1484 at 123.329 kb on - strand, within GFF1484 at 123.338 kb on - strand, within GFF1484 at 123.786 kb on + strand, within GFF1485 at 123.786 kb on + strand, within GFF1485 at 123.786 kb on + strand, within GFF1485 at 124.132 kb on - strand, within GFF1485 at 124.132 kb on - strand, within GFF1485 at 124.132 kb on - strand, within GFF1485 at 124.252 kb on - strand, within GFF1485 at 124.574 kb on + strand, within GFF1486 at 124.575 kb on - strand, within GFF1486 at 124.575 kb on - strand, within GFF1486 at 124.575 kb on - strand, within GFF1486 at 124.575 kb on - strand, within GFF1486
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 121,671 + GFF1483 0.73 -0.2 121,671 + GFF1483 0.73 +0.9 121,671 + GFF1483 0.73 -0.2 121,671 + GFF1483 0.73 -1.3 121,672 - GFF1483 0.73 +0.3 121,672 - GFF1483 0.73 +0.4 121,672 - GFF1483 0.73 -0.1 122,379 + -0.6 122,380 - -1.0 122,442 + +0.0 122,442 + -0.1 122,443 - -0.0 122,443 - +0.0 122,443 - +0.2 122,923 + GFF1484 0.38 +1.2 122,924 - GFF1484 0.38 +0.2 122,924 - GFF1484 0.38 -1.2 123,022 + GFF1484 0.47 -0.3 123,022 + GFF1484 0.47 -1.0 123,023 - GFF1484 0.47 +0.4 123,023 - GFF1484 0.47 -0.1 123,295 + GFF1484 0.73 -0.3 123,296 - GFF1484 0.73 +0.2 123,329 - GFF1484 0.76 +0.2 123,338 - GFF1484 0.77 +1.3 123,786 + GFF1485 0.23 -0.3 123,786 + GFF1485 0.23 -0.8 123,786 + GFF1485 0.23 +0.4 124,132 - GFF1485 0.63 -0.6 124,132 - GFF1485 0.63 -0.2 124,132 - GFF1485 0.63 -1.2 124,252 - GFF1485 0.77 -1.2 124,574 + GFF1486 0.14 -0.9 124,575 - GFF1486 0.14 -0.1 124,575 - GFF1486 0.14 -0.6 124,575 - GFF1486 0.14 -0.3 124,575 - GFF1486 0.14 +0.0
Or see this region's nucleotide sequence