Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1455 and GFF1456 overlap by 1 nucleotides GFF1456 and GFF1457 overlap by 4 nucleotides
GFF1455 - 1,4-alpha-glucan branching enzyme GlgB, at 88,429 to 90,648
GFF1455
GFF1456 - Glycogen operon protein GlgX, at 90,648 to 92,750
GFF1456
GFF1457 - Malto-oligosyltrehalose trehalohydrolase, at 92,747 to 94,498
GFF1457
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 89.900 kb on - strand, within GFF1455 at 89.960 kb on - strand, within GFF1455 at 90.001 kb on + strand, within GFF1455 at 90.001 kb on + strand, within GFF1455 at 90.287 kb on - strand, within GFF1455 at 90.287 kb on - strand, within GFF1455 at 90.451 kb on + strand at 90.515 kb on - strand at 90.870 kb on + strand, within GFF1456 at 90.894 kb on + strand, within GFF1456 at 90.948 kb on + strand, within GFF1456 at 91.032 kb on + strand, within GFF1456 at 91.032 kb on + strand, within GFF1456 at 91.143 kb on + strand, within GFF1456 at 91.143 kb on + strand, within GFF1456 at 91.143 kb on + strand, within GFF1456 at 91.144 kb on - strand, within GFF1456 at 91.144 kb on - strand, within GFF1456 at 91.144 kb on - strand, within GFF1456 at 91.308 kb on + strand, within GFF1456 at 91.309 kb on - strand, within GFF1456 at 91.336 kb on - strand, within GFF1456 at 91.344 kb on + strand, within GFF1456 at 91.380 kb on + strand, within GFF1456 at 91.381 kb on - strand, within GFF1456 at 91.381 kb on - strand, within GFF1456 at 91.381 kb on - strand, within GFF1456 at 91.467 kb on + strand, within GFF1456 at 91.467 kb on + strand, within GFF1456 at 91.467 kb on + strand, within GFF1456 at 91.536 kb on + strand, within GFF1456 at 91.537 kb on - strand, within GFF1456 at 91.537 kb on - strand, within GFF1456 at 91.566 kb on + strand, within GFF1456 at 91.651 kb on - strand, within GFF1456 at 91.666 kb on - strand, within GFF1456 at 91.998 kb on + strand, within GFF1456 at 91.998 kb on + strand, within GFF1456 at 91.998 kb on + strand, within GFF1456 at 92.104 kb on - strand, within GFF1456 at 92.271 kb on + strand, within GFF1456 at 92.968 kb on + strand, within GFF1457 at 92.969 kb on - strand, within GFF1457 at 92.969 kb on - strand, within GFF1457 at 93.099 kb on + strand, within GFF1457 at 93.124 kb on + strand, within GFF1457 at 93.170 kb on - strand, within GFF1457 at 93.225 kb on - strand, within GFF1457 at 93.225 kb on - strand, within GFF1457 at 93.260 kb on + strand, within GFF1457 at 93.260 kb on + strand, within GFF1457 at 93.261 kb on - strand, within GFF1457 at 93.261 kb on - strand, within GFF1457 at 93.261 kb on - strand, within GFF1457 at 93.339 kb on - strand, within GFF1457 at 93.339 kb on - strand, within GFF1457 at 93.339 kb on - strand, within GFF1457 at 93.365 kb on + strand, within GFF1457 at 93.366 kb on - strand, within GFF1457 at 93.378 kb on - strand, within GFF1457 at 93.725 kb on + strand, within GFF1457 at 93.725 kb on + strand, within GFF1457 at 93.726 kb on - strand, within GFF1457 at 93.726 kb on - strand, within GFF1457 at 93.726 kb on - strand, within GFF1457 at 93.726 kb on - strand, within GFF1457 at 93.728 kb on + strand, within GFF1457 at 93.728 kb on + strand, within GFF1457 at 93.728 kb on + strand, within GFF1457
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 89,900 - GFF1455 0.66 -0.8 89,960 - GFF1455 0.69 -1.4 90,001 + GFF1455 0.71 +0.2 90,001 + GFF1455 0.71 +0.0 90,287 - GFF1455 0.84 +0.2 90,287 - GFF1455 0.84 -1.4 90,451 + +0.6 90,515 - +0.4 90,870 + GFF1456 0.11 -0.4 90,894 + GFF1456 0.12 -1.0 90,948 + GFF1456 0.14 +0.2 91,032 + GFF1456 0.18 -2.8 91,032 + GFF1456 0.18 +0.3 91,143 + GFF1456 0.24 +0.8 91,143 + GFF1456 0.24 +0.1 91,143 + GFF1456 0.24 -1.4 91,144 - GFF1456 0.24 -0.4 91,144 - GFF1456 0.24 +0.0 91,144 - GFF1456 0.24 -0.2 91,308 + GFF1456 0.31 +1.0 91,309 - GFF1456 0.31 -1.0 91,336 - GFF1456 0.33 +0.5 91,344 + GFF1456 0.33 -0.1 91,380 + GFF1456 0.35 +0.7 91,381 - GFF1456 0.35 -0.0 91,381 - GFF1456 0.35 +0.3 91,381 - GFF1456 0.35 -0.1 91,467 + GFF1456 0.39 +0.2 91,467 + GFF1456 0.39 +0.3 91,467 + GFF1456 0.39 -0.6 91,536 + GFF1456 0.42 +0.1 91,537 - GFF1456 0.42 -0.4 91,537 - GFF1456 0.42 -0.3 91,566 + GFF1456 0.44 -1.8 91,651 - GFF1456 0.48 +0.1 91,666 - GFF1456 0.48 -0.9 91,998 + GFF1456 0.64 -1.0 91,998 + GFF1456 0.64 +0.3 91,998 + GFF1456 0.64 -0.0 92,104 - GFF1456 0.69 +1.3 92,271 + GFF1456 0.77 +0.4 92,968 + GFF1457 0.13 +1.0 92,969 - GFF1457 0.13 -0.1 92,969 - GFF1457 0.13 +0.2 93,099 + GFF1457 0.20 -0.7 93,124 + GFF1457 0.22 -0.1 93,170 - GFF1457 0.24 +0.1 93,225 - GFF1457 0.27 +0.7 93,225 - GFF1457 0.27 +0.1 93,260 + GFF1457 0.29 +1.1 93,260 + GFF1457 0.29 -0.8 93,261 - GFF1457 0.29 -0.2 93,261 - GFF1457 0.29 +0.4 93,261 - GFF1457 0.29 +0.6 93,339 - GFF1457 0.34 +0.3 93,339 - GFF1457 0.34 +0.2 93,339 - GFF1457 0.34 -1.2 93,365 + GFF1457 0.35 +0.9 93,366 - GFF1457 0.35 -0.3 93,378 - GFF1457 0.36 +0.3 93,725 + GFF1457 0.56 +1.6 93,725 + GFF1457 0.56 -0.6 93,726 - GFF1457 0.56 -0.5 93,726 - GFF1457 0.56 +0.2 93,726 - GFF1457 0.56 -0.6 93,726 - GFF1457 0.56 -1.3 93,728 + GFF1457 0.56 -0.3 93,728 + GFF1457 0.56 -0.2 93,728 + GFF1457 0.56 -0.3
Or see this region's nucleotide sequence