Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1452 and GFF1453 are separated by 291 nucleotides GFF1453 and GFF1454 overlap by 4 nucleotides
GFF1452 - hypothetical protein, at 76,680 to 81,659
GFF1452
GFF1453 - Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 81,951 to 85,154
GFF1453
GFF1454 - Glucosamine kinase, at 85,151 to 88,432
GFF1454
Position (kb) 81
82
83
84
85
86 Strain fitness (log2 ratio) -1
0
1
2 at 81.107 kb on + strand, within GFF1452 at 81.108 kb on - strand, within GFF1452 at 81.264 kb on + strand at 81.520 kb on + strand at 81.825 kb on + strand at 81.826 kb on - strand at 81.978 kb on + strand at 81.979 kb on - strand at 82.024 kb on - strand at 82.024 kb on - strand at 82.024 kb on - strand at 82.024 kb on - strand at 82.024 kb on - strand at 82.290 kb on - strand, within GFF1453 at 82.290 kb on - strand, within GFF1453 at 82.376 kb on + strand, within GFF1453 at 82.419 kb on + strand, within GFF1453 at 83.624 kb on + strand, within GFF1453 at 83.625 kb on - strand, within GFF1453 at 83.625 kb on - strand, within GFF1453 at 83.625 kb on - strand, within GFF1453 at 83.743 kb on - strand, within GFF1453 at 83.788 kb on - strand, within GFF1453 at 83.896 kb on - strand, within GFF1453 at 83.986 kb on - strand, within GFF1453 at 84.214 kb on - strand, within GFF1453 at 84.214 kb on - strand, within GFF1453 at 84.234 kb on + strand, within GFF1453 at 84.444 kb on + strand, within GFF1453 at 84.444 kb on + strand, within GFF1453 at 84.478 kb on - strand, within GFF1453 at 84.479 kb on + strand, within GFF1453 at 84.479 kb on + strand, within GFF1453 at 84.479 kb on + strand, within GFF1453 at 84.685 kb on - strand, within GFF1453 at 84.736 kb on - strand, within GFF1453 at 84.792 kb on - strand, within GFF1453 at 84.871 kb on - strand at 84.871 kb on - strand at 84.898 kb on - strand at 84.898 kb on - strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.158 kb on + strand at 85.215 kb on - strand at 85.232 kb on + strand at 85.233 kb on - strand at 85.358 kb on + strand at 85.359 kb on - strand at 85.386 kb on - strand at 85.386 kb on - strand at 85.386 kb on - strand at 85.401 kb on - strand at 85.577 kb on + strand, within GFF1454 at 85.577 kb on + strand, within GFF1454 at 85.811 kb on + strand, within GFF1454 at 85.812 kb on - strand, within GFF1454 at 85.812 kb on - strand, within GFF1454 at 85.933 kb on + strand, within GFF1454 at 85.933 kb on + strand, within GFF1454 at 85.934 kb on - strand, within GFF1454 at 85.934 kb on - strand, within GFF1454 at 85.934 kb on - strand, within GFF1454 at 85.934 kb on - strand, within GFF1454 at 85.934 kb on - strand, within GFF1454 at 85.959 kb on - strand, within GFF1454 at 86.018 kb on + strand, within GFF1454 at 86.018 kb on + strand, within GFF1454 at 86.018 kb on + strand, within GFF1454 at 86.018 kb on + strand, within GFF1454
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 81,107 + GFF1452 0.89 +0.1 81,108 - GFF1452 0.89 -0.2 81,264 + +0.3 81,520 + -1.0 81,825 + -0.6 81,826 - -0.5 81,978 + +0.3 81,979 - -0.1 82,024 - -0.9 82,024 - -0.9 82,024 - +0.1 82,024 - +0.5 82,024 - +0.0 82,290 - GFF1453 0.11 -0.9 82,290 - GFF1453 0.11 -0.4 82,376 + GFF1453 0.13 -0.4 82,419 + GFF1453 0.15 -0.7 83,624 + GFF1453 0.52 -1.0 83,625 - GFF1453 0.52 -0.5 83,625 - GFF1453 0.52 +0.7 83,625 - GFF1453 0.52 -0.0 83,743 - GFF1453 0.56 -0.4 83,788 - GFF1453 0.57 +0.1 83,896 - GFF1453 0.61 +0.3 83,986 - GFF1453 0.64 -0.2 84,214 - GFF1453 0.71 +0.3 84,214 - GFF1453 0.71 +0.4 84,234 + GFF1453 0.71 -1.6 84,444 + GFF1453 0.78 +1.4 84,444 + GFF1453 0.78 -0.3 84,478 - GFF1453 0.79 -0.2 84,479 + GFF1453 0.79 -0.7 84,479 + GFF1453 0.79 -0.0 84,479 + GFF1453 0.79 +0.3 84,685 - GFF1453 0.85 -0.5 84,736 - GFF1453 0.87 +0.3 84,792 - GFF1453 0.89 -0.9 84,871 - -0.4 84,871 - +0.3 84,898 - +1.2 84,898 - -0.6 85,094 - +1.0 85,094 - +1.6 85,158 + +1.9 85,215 - +0.2 85,232 + -1.4 85,233 - -0.4 85,358 + +0.4 85,359 - +0.3 85,386 - +0.0 85,386 - +0.0 85,386 - -0.9 85,401 - -0.5 85,577 + GFF1454 0.13 -0.7 85,577 + GFF1454 0.13 -0.5 85,811 + GFF1454 0.20 -0.0 85,812 - GFF1454 0.20 +0.7 85,812 - GFF1454 0.20 +0.4 85,933 + GFF1454 0.24 -0.4 85,933 + GFF1454 0.24 +0.9 85,934 - GFF1454 0.24 -0.3 85,934 - GFF1454 0.24 -0.0 85,934 - GFF1454 0.24 -0.3 85,934 - GFF1454 0.24 +0.6 85,934 - GFF1454 0.24 -0.3 85,959 - GFF1454 0.25 +1.6 86,018 + GFF1454 0.26 -1.6 86,018 + GFF1454 0.26 -0.7 86,018 + GFF1454 0.26 -1.7 86,018 + GFF1454 0.26 +0.2
Or see this region's nucleotide sequence