Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1413 and GFF1414 are separated by 164 nucleotides GFF1414 and GFF1415 are separated by 242 nucleotides GFF1415 and GFF1416 are separated by 226 nucleotides GFF1416 and GFF1417 are separated by 41 nucleotides
GFF1413 - D-amino acid dehydrogenase 1, at 35,311 to 36,576
GFF1413
GFF1414 - Leucine-responsive regulatory protein, at 36,741 to 37,199
GFF1414
GFF1415 - hypothetical protein, at 37,442 to 37,681
GFF1415
GFF1416 - hypothetical protein, at 37,908 to 38,390
GFF1416
GFF1417 - Polyphosphate:ADP phosphotransferase 3, at 38,432 to 39,298
GFF1417
Position (kb) 37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.525 kb on - strand at 36.525 kb on - strand at 36.528 kb on - strand at 36.897 kb on + strand, within GFF1414 at 36.898 kb on - strand, within GFF1414 at 37.059 kb on + strand, within GFF1414 at 37.059 kb on + strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.613 kb on + strand, within GFF1415 at 37.614 kb on - strand, within GFF1415 at 37.931 kb on + strand at 37.931 kb on + strand at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 37.980 kb on + strand, within GFF1416 at 38.250 kb on - strand, within GFF1416 at 38.278 kb on - strand, within GFF1416 at 38.295 kb on + strand, within GFF1416 at 38.314 kb on - strand, within GFF1416 at 38.314 kb on - strand, within GFF1416 at 38.402 kb on - strand at 38.546 kb on + strand, within GFF1417 at 38.547 kb on - strand, within GFF1417 at 38.665 kb on + strand, within GFF1417
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 36,525 - -2.5 36,525 - -2.2 36,528 - +0.2 36,897 + GFF1414 0.34 -0.7 36,898 - GFF1414 0.34 +0.6 37,059 + GFF1414 0.69 -1.2 37,059 + GFF1414 0.69 -0.4 37,060 - GFF1414 0.69 -0.2 37,060 - GFF1414 0.69 -0.2 37,060 - GFF1414 0.69 +1.9 37,613 + GFF1415 0.71 -1.3 37,614 - GFF1415 0.72 +0.3 37,931 + +0.7 37,931 + +0.4 37,980 + GFF1416 0.15 +0.6 37,980 + GFF1416 0.15 -1.4 37,980 + GFF1416 0.15 -0.1 37,980 + GFF1416 0.15 +0.7 37,980 + GFF1416 0.15 -0.4 38,250 - GFF1416 0.71 -0.1 38,278 - GFF1416 0.77 +0.4 38,295 + GFF1416 0.80 -0.4 38,314 - GFF1416 0.84 -0.3 38,314 - GFF1416 0.84 -0.2 38,402 - +0.5 38,546 + GFF1417 0.13 -2.4 38,547 - GFF1417 0.13 +0.6 38,665 + GFF1417 0.27 +0.6
Or see this region's nucleotide sequence