Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1399 and GFF1400 overlap by 4 nucleotides GFF1400 and GFF1401 are separated by 82 nucleotides GFF1401 and GFF1402 are separated by 68 nucleotides
GFF1399 - putative ABC transporter ATP-binding/permease protein, at 17,777 to 19,585
GFF1399
GFF1400 - ATP-binding/permease protein CydD, at 19,582 to 21,411
GFF1400
GFF1401 - hypothetical protein, at 21,494 to 22,120
GFF1401
GFF1402 - hypothetical protein, at 22,189 to 22,707
GFF1402
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -1
0
1 at 18.942 kb on + strand, within GFF1399 at 18.943 kb on - strand, within GFF1399 at 19.132 kb on + strand, within GFF1399 at 19.132 kb on + strand, within GFF1399 at 19.133 kb on - strand, within GFF1399 at 19.658 kb on - strand at 20.090 kb on + strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.091 kb on - strand, within GFF1400 at 20.260 kb on - strand, within GFF1400 at 20.260 kb on - strand, within GFF1400 at 20.441 kb on + strand, within GFF1400 at 20.442 kb on - strand, within GFF1400 at 20.471 kb on + strand, within GFF1400 at 20.471 kb on + strand, within GFF1400 at 20.471 kb on + strand, within GFF1400 at 20.930 kb on + strand, within GFF1400 at 20.939 kb on + strand, within GFF1400 at 20.940 kb on - strand, within GFF1400 at 20.940 kb on - strand, within GFF1400 at 21.404 kb on + strand at 21.678 kb on + strand, within GFF1401 at 21.678 kb on + strand, within GFF1401 at 21.679 kb on - strand, within GFF1401 at 21.679 kb on - strand, within GFF1401 at 21.882 kb on + strand, within GFF1401 at 21.882 kb on + strand, within GFF1401 at 22.078 kb on - strand at 22.078 kb on - strand at 22.078 kb on - strand at 22.190 kb on + strand at 22.190 kb on + strand at 22.240 kb on + strand at 22.240 kb on + strand at 22.304 kb on + strand, within GFF1402 at 22.304 kb on + strand, within GFF1402 at 22.304 kb on + strand, within GFF1402 at 22.304 kb on + strand, within GFF1402 at 22.304 kb on + strand, within GFF1402 at 22.305 kb on - strand, within GFF1402 at 22.305 kb on - strand, within GFF1402 at 22.305 kb on - strand, within GFF1402 at 22.305 kb on - strand, within GFF1402 at 22.305 kb on - strand, within GFF1402
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 18,942 + GFF1399 0.64 +0.2 18,943 - GFF1399 0.64 +0.2 19,132 + GFF1399 0.75 -0.1 19,132 + GFF1399 0.75 +0.6 19,133 - GFF1399 0.75 +0.4 19,658 - +0.9 20,090 + GFF1400 0.28 +0.1 20,091 - GFF1400 0.28 +1.1 20,091 - GFF1400 0.28 -0.3 20,091 - GFF1400 0.28 +0.3 20,091 - GFF1400 0.28 -0.4 20,091 - GFF1400 0.28 -1.7 20,091 - GFF1400 0.28 -0.6 20,091 - GFF1400 0.28 +0.1 20,260 - GFF1400 0.37 +0.1 20,260 - GFF1400 0.37 +1.4 20,441 + GFF1400 0.47 +0.9 20,442 - GFF1400 0.47 -0.5 20,471 + GFF1400 0.49 -0.1 20,471 + GFF1400 0.49 +0.7 20,471 + GFF1400 0.49 -0.0 20,930 + GFF1400 0.74 -0.7 20,939 + GFF1400 0.74 -0.3 20,940 - GFF1400 0.74 -0.5 20,940 - GFF1400 0.74 -0.5 21,404 + +0.7 21,678 + GFF1401 0.29 -0.2 21,678 + GFF1401 0.29 +0.5 21,679 - GFF1401 0.30 -0.1 21,679 - GFF1401 0.30 -0.5 21,882 + GFF1401 0.62 +0.5 21,882 + GFF1401 0.62 +0.9 22,078 - +0.1 22,078 - -0.1 22,078 - +0.4 22,190 + +1.1 22,190 + +0.4 22,240 + -0.1 22,240 + -0.0 22,304 + GFF1402 0.22 -0.1 22,304 + GFF1402 0.22 -0.2 22,304 + GFF1402 0.22 -0.2 22,304 + GFF1402 0.22 +1.0 22,304 + GFF1402 0.22 +0.6 22,305 - GFF1402 0.22 -0.8 22,305 - GFF1402 0.22 -0.5 22,305 - GFF1402 0.22 +0.3 22,305 - GFF1402 0.22 +0.4 22,305 - GFF1402 0.22 +0.1
Or see this region's nucleotide sequence