Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1394 and GFF1395 are separated by 69 nucleotides GFF1395 and GFF1396 overlap by 1 nucleotides GFF1396 and GFF1397 overlap by 4 nucleotides GFF1397 and GFF1398 overlap by 14 nucleotides
GFF1394 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 13,146 to 14,330
GFF1394
GFF1395 - High-affinity branched-chain amino acid transport system permease protein LivH, at 14,400 to 15,272
GFF1395
GFF1396 - hypothetical protein, at 15,272 to 16,216
GFF1396
GFF1397 - Lipopolysaccharide export system ATP-binding protein LptB, at 16,213 to 17,013
GFF1397
GFF1398 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 17,000 to 17,701
GFF1398
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1
2 at 14.451 kb on + strand at 14.452 kb on - strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.862 kb on + strand, within GFF1395 at 14.863 kb on - strand, within GFF1395 at 15.039 kb on + strand, within GFF1395 at 15.040 kb on - strand, within GFF1395 at 15.165 kb on + strand, within GFF1395 at 15.166 kb on - strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.180 kb on + strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.181 kb on - strand, within GFF1395 at 15.432 kb on - strand, within GFF1396 at 15.432 kb on - strand, within GFF1396 at 15.482 kb on + strand, within GFF1396 at 15.483 kb on - strand, within GFF1396 at 15.561 kb on + strand, within GFF1396 at 15.562 kb on - strand, within GFF1396 at 15.562 kb on - strand, within GFF1396 at 15.606 kb on - strand, within GFF1396 at 15.606 kb on - strand, within GFF1396 at 15.608 kb on + strand, within GFF1396 at 15.659 kb on + strand, within GFF1396 at 15.923 kb on + strand, within GFF1396 at 15.923 kb on + strand, within GFF1396 at 15.924 kb on - strand, within GFF1396 at 15.924 kb on - strand, within GFF1396 at 16.112 kb on + strand, within GFF1396 at 16.112 kb on + strand, within GFF1396 at 16.381 kb on + strand, within GFF1397 at 16.566 kb on + strand, within GFF1397 at 16.967 kb on - strand at 17.030 kb on + strand at 17.030 kb on + strand at 17.031 kb on - strand at 17.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 14,451 + +1.0 14,452 - +0.3 14,484 + +1.7 14,484 + +1.9 14,484 + +0.0 14,485 - +0.5 14,485 - -0.0 14,485 - -0.1 14,485 - -0.5 14,485 - -0.5 14,862 + GFF1395 0.53 +0.2 14,863 - GFF1395 0.53 +0.3 15,039 + GFF1395 0.73 -0.1 15,040 - GFF1395 0.73 -0.1 15,165 + GFF1395 0.88 +0.1 15,166 - GFF1395 0.88 +0.4 15,180 + GFF1395 0.89 -0.1 15,180 + GFF1395 0.89 -0.7 15,180 + GFF1395 0.89 +0.2 15,180 + GFF1395 0.89 +0.5 15,181 - GFF1395 0.89 -0.0 15,181 - GFF1395 0.89 +0.6 15,181 - GFF1395 0.89 -0.2 15,181 - GFF1395 0.89 +0.5 15,432 - GFF1396 0.17 -0.3 15,432 - GFF1396 0.17 +0.0 15,482 + GFF1396 0.22 -0.7 15,483 - GFF1396 0.22 +0.6 15,561 + GFF1396 0.31 -0.0 15,562 - GFF1396 0.31 -0.1 15,562 - GFF1396 0.31 -0.6 15,606 - GFF1396 0.35 -0.3 15,606 - GFF1396 0.35 -0.7 15,608 + GFF1396 0.36 +0.1 15,659 + GFF1396 0.41 -0.4 15,923 + GFF1396 0.69 +0.3 15,923 + GFF1396 0.69 -0.2 15,924 - GFF1396 0.69 +0.1 15,924 - GFF1396 0.69 -0.4 16,112 + GFF1396 0.89 +0.6 16,112 + GFF1396 0.89 -0.3 16,381 + GFF1397 0.21 -0.1 16,566 + GFF1397 0.44 +0.5 16,967 - +0.1 17,030 + -0.5 17,030 + +1.3 17,031 - -0.3 17,031 - -0.7
Or see this region's nucleotide sequence