Strain Fitness in Xanthobacter sp. DMC5 around GFF1197

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1195 and GFF1196 are separated by 98 nucleotidesGFF1196 and GFF1197 are separated by 38 nucleotidesGFF1197 and GFF1198 are separated by 0 nucleotidesGFF1198 and GFF1199 are separated by 9 nucleotides GFF1195 - hypothetical protein, at 1,294,805 to 1,295,452 GFF1195 GFF1196 - hypothetical protein, at 1,295,551 to 1,296,369 GFF1196 GFF1197 - PqqA peptide cyclase, at 1,296,408 to 1,297,475 GFF1197 GFF1198 - putative glycosyltransferase, at 1,297,476 to 1,298,216 GFF1198 GFF1199 - Purine nucleoside phosphorylase DeoD-type, at 1,298,226 to 1,299,116 GFF1199 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -2 -1 0 1 2at 1295.487 kb on + strandat 1295.767 kb on + strand, within GFF1196at 1295.767 kb on + strand, within GFF1196at 1295.767 kb on + strand, within GFF1196at 1295.767 kb on + strand, within GFF1196at 1295.768 kb on - strand, within GFF1196at 1296.031 kb on + strand, within GFF1196at 1296.034 kb on + strand, within GFF1196at 1296.035 kb on - strand, within GFF1196at 1296.166 kb on + strand, within GFF1196at 1296.167 kb on - strand, within GFF1196at 1296.564 kb on + strand, within GFF1197at 1296.564 kb on + strand, within GFF1197at 1296.564 kb on + strand, within GFF1197at 1296.564 kb on + strand, within GFF1197at 1296.565 kb on - strand, within GFF1197at 1296.565 kb on - strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.671 kb on + strand, within GFF1197at 1296.672 kb on - strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.726 kb on + strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.727 kb on - strand, within GFF1197at 1296.864 kb on + strand, within GFF1197at 1296.864 kb on + strand, within GFF1197at 1296.865 kb on - strand, within GFF1197at 1296.865 kb on - strand, within GFF1197at 1296.994 kb on + strand, within GFF1197at 1297.029 kb on + strand, within GFF1197at 1297.030 kb on - strand, within GFF1197at 1297.095 kb on + strand, within GFF1197at 1297.125 kb on + strand, within GFF1197at 1297.126 kb on - strand, within GFF1197at 1297.126 kb on - strand, within GFF1197at 1297.126 kb on - strand, within GFF1197at 1297.126 kb on - strand, within GFF1197at 1297.128 kb on - strand, within GFF1197at 1297.269 kb on + strand, within GFF1197at 1297.269 kb on + strand, within GFF1197at 1297.269 kb on + strand, within GFF1197at 1297.269 kb on + strand, within GFF1197at 1297.269 kb on + strand, within GFF1197at 1297.270 kb on - strand, within GFF1197at 1297.270 kb on - strand, within GFF1197at 1297.270 kb on - strand, within GFF1197at 1297.270 kb on - strand, within GFF1197at 1297.270 kb on - strand, within GFF1197at 1297.330 kb on - strand, within GFF1197at 1297.338 kb on + strand, within GFF1197at 1297.338 kb on + strand, within GFF1197at 1297.338 kb on + strand, within GFF1197at 1297.339 kb on - strand, within GFF1197at 1297.339 kb on - strand, within GFF1197at 1297.339 kb on - strand, within GFF1197at 1297.395 kb on + strandat 1297.395 kb on + strandat 1297.395 kb on + strandat 1297.396 kb on - strandat 1297.473 kb on + strandat 1297.473 kb on + strandat 1297.473 kb on + strandat 1297.474 kb on - strandat 1297.474 kb on - strandat 1297.474 kb on - strandat 1297.814 kb on - strand, within GFF1198at 1297.992 kb on + strand, within GFF1198at 1297.993 kb on - strand, within GFF1198at 1298.460 kb on + strand, within GFF1199at 1298.460 kb on + strand, within GFF1199at 1298.460 kb on + strand, within GFF1199at 1298.460 kb on + strand, within GFF1199at 1298.460 kb on + strand, within GFF1199at 1298.461 kb on - strand, within GFF1199at 1298.461 kb on - strand, within GFF1199at 1298.461 kb on - strand, within GFF1199

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,295,487 + -0.1
1,295,767 + GFF1196 0.26 -0.4
1,295,767 + GFF1196 0.26 +1.2
1,295,767 + GFF1196 0.26 -0.1
1,295,767 + GFF1196 0.26 -0.1
1,295,768 - GFF1196 0.26 -0.3
1,296,031 + GFF1196 0.59 -0.8
1,296,034 + GFF1196 0.59 -0.6
1,296,035 - GFF1196 0.59 -1.4
1,296,166 + GFF1196 0.75 -0.8
1,296,167 - GFF1196 0.75 -0.1
1,296,564 + GFF1197 0.15 -0.5
1,296,564 + GFF1197 0.15 -0.8
1,296,564 + GFF1197 0.15 -0.0
1,296,564 + GFF1197 0.15 +0.1
1,296,565 - GFF1197 0.15 +0.3
1,296,565 - GFF1197 0.15 +0.1
1,296,671 + GFF1197 0.25 +0.2
1,296,671 + GFF1197 0.25 +0.5
1,296,671 + GFF1197 0.25 -0.5
1,296,671 + GFF1197 0.25 +0.8
1,296,671 + GFF1197 0.25 +0.2
1,296,671 + GFF1197 0.25 +0.2
1,296,671 + GFF1197 0.25 -0.0
1,296,672 - GFF1197 0.25 -0.4
1,296,726 + GFF1197 0.30 -0.9
1,296,726 + GFF1197 0.30 +0.2
1,296,726 + GFF1197 0.30 +0.2
1,296,726 + GFF1197 0.30 +0.2
1,296,726 + GFF1197 0.30 -0.2
1,296,726 + GFF1197 0.30 -0.5
1,296,726 + GFF1197 0.30 +0.6
1,296,726 + GFF1197 0.30 -0.1
1,296,726 + GFF1197 0.30 -0.2
1,296,727 - GFF1197 0.30 +0.2
1,296,727 - GFF1197 0.30 -0.2
1,296,727 - GFF1197 0.30 -0.4
1,296,727 - GFF1197 0.30 +0.3
1,296,727 - GFF1197 0.30 +0.5
1,296,727 - GFF1197 0.30 +0.1
1,296,727 - GFF1197 0.30 -0.1
1,296,864 + GFF1197 0.43 -0.3
1,296,864 + GFF1197 0.43 +0.5
1,296,865 - GFF1197 0.43 +1.0
1,296,865 - GFF1197 0.43 +0.6
1,296,994 + GFF1197 0.55 -0.8
1,297,029 + GFF1197 0.58 -0.3
1,297,030 - GFF1197 0.58 +0.5
1,297,095 + GFF1197 0.64 -1.2
1,297,125 + GFF1197 0.67 +0.8
1,297,126 - GFF1197 0.67 -0.0
1,297,126 - GFF1197 0.67 -0.8
1,297,126 - GFF1197 0.67 -0.5
1,297,126 - GFF1197 0.67 -1.1
1,297,128 - GFF1197 0.67 -0.6
1,297,269 + GFF1197 0.81 +1.8
1,297,269 + GFF1197 0.81 -0.7
1,297,269 + GFF1197 0.81 -0.1
1,297,269 + GFF1197 0.81 -0.3
1,297,269 + GFF1197 0.81 +0.6
1,297,270 - GFF1197 0.81 -1.1
1,297,270 - GFF1197 0.81 -0.6
1,297,270 - GFF1197 0.81 -1.4
1,297,270 - GFF1197 0.81 +0.1
1,297,270 - GFF1197 0.81 +1.3
1,297,330 - GFF1197 0.86 +0.6
1,297,338 + GFF1197 0.87 -0.1
1,297,338 + GFF1197 0.87 -0.3
1,297,338 + GFF1197 0.87 -0.4
1,297,339 - GFF1197 0.87 -0.1
1,297,339 - GFF1197 0.87 +1.5
1,297,339 - GFF1197 0.87 +0.0
1,297,395 + +0.8
1,297,395 + +1.1
1,297,395 + -0.1
1,297,396 - +0.1
1,297,473 + +0.3
1,297,473 + -0.1
1,297,473 + +0.2
1,297,474 - +0.1
1,297,474 - -0.1
1,297,474 - -1.3
1,297,814 - GFF1198 0.46 -0.0
1,297,992 + GFF1198 0.70 -0.7
1,297,993 - GFF1198 0.70 -0.5
1,298,460 + GFF1199 0.26 +0.0
1,298,460 + GFF1199 0.26 +0.5
1,298,460 + GFF1199 0.26 -1.9
1,298,460 + GFF1199 0.26 -1.8
1,298,460 + GFF1199 0.26 -0.4
1,298,461 - GFF1199 0.26 +0.1
1,298,461 - GFF1199 0.26 +1.1
1,298,461 - GFF1199 0.26 +0.1

Or see this region's nucleotide sequence