Strain Fitness in Xanthobacter sp. DMC5 around GFF119

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF118 and GFF119 are separated by 40 nucleotidesGFF119 and GFF120 are separated by 219 nucleotidesGFF120 and GFF121 overlap by 1 nucleotides GFF118 - 50S ribosomal protein L9, at 126,971 to 127,552 GFF118 GFF119 - hypothetical protein, at 127,593 to 128,465 GFF119 GFF120 - 30S ribosomal protein S18, at 128,685 to 128,945 GFF120 GFF121 - 30S ribosomal protein S6, at 128,945 to 129,397 GFF121 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1at 128.324 kb on - strand, within GFF119at 128.324 kb on - strand, within GFF119at 128.324 kb on - strand, within GFF119at 128.324 kb on - strand, within GFF119at 128.324 kb on - strand, within GFF119at 128.447 kb on - strandat 128.540 kb on - strandat 128.540 kb on - strandat 128.540 kb on - strandat 128.540 kb on - strandat 128.540 kb on - strandat 128.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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128,324 - GFF119 0.84 -0.1
128,324 - GFF119 0.84 -0.1
128,324 - GFF119 0.84 +0.4
128,324 - GFF119 0.84 -0.2
128,324 - GFF119 0.84 -1.3
128,447 - -0.2
128,540 - -0.8
128,540 - -0.1
128,540 - +0.8
128,540 - -0.8
128,540 - -0.9
128,540 - -0.1

Or see this region's nucleotide sequence