Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1171 and GFF1172 are separated by 117 nucleotides GFF1172 and GFF1173 overlap by 4 nucleotides GFF1173 and GFF1174 overlap by 4 nucleotides
GFF1171 - Dihydroanticapsin 7-dehydrogenase, at 1,272,978 to 1,273,727
GFF1171
GFF1172 - High-affinity branched-chain amino acid transport system permease protein LivH, at 1,273,845 to 1,274,693
GFF1172
GFF1173 - hypothetical protein, at 1,274,690 to 1,275,682
GFF1173
GFF1174 - Sulfate/thiosulfate import ATP-binding protein CysA, at 1,275,679 to 1,276,386
GFF1174
Position (kb) 1273
1274
1275 Strain fitness (log2 ratio) -1
0
1
2 at 1272.944 kb on + strand at 1272.944 kb on + strand at 1273.212 kb on + strand, within GFF1171 at 1273.213 kb on - strand, within GFF1171 at 1273.213 kb on - strand, within GFF1171 at 1273.233 kb on + strand, within GFF1171 at 1273.234 kb on - strand, within GFF1171 at 1273.234 kb on - strand, within GFF1171 at 1273.234 kb on - strand, within GFF1171 at 1273.234 kb on - strand, within GFF1171 at 1273.234 kb on - strand, within GFF1171 at 1273.441 kb on - strand, within GFF1171 at 1273.441 kb on - strand, within GFF1171 at 1273.441 kb on - strand, within GFF1171 at 1273.441 kb on - strand, within GFF1171 at 1273.495 kb on - strand, within GFF1171 at 1273.830 kb on + strand at 1273.831 kb on - strand at 1273.856 kb on + strand at 1273.876 kb on - strand at 1273.891 kb on - strand at 1273.891 kb on - strand at 1273.977 kb on + strand, within GFF1172 at 1273.977 kb on + strand, within GFF1172 at 1273.977 kb on + strand, within GFF1172 at 1273.977 kb on + strand, within GFF1172 at 1273.978 kb on - strand, within GFF1172 at 1273.978 kb on - strand, within GFF1172 at 1273.987 kb on - strand, within GFF1172 at 1273.987 kb on - strand, within GFF1172 at 1274.250 kb on + strand, within GFF1172 at 1274.331 kb on + strand, within GFF1172 at 1274.332 kb on - strand, within GFF1172 at 1274.936 kb on + strand, within GFF1173 at 1274.936 kb on + strand, within GFF1173 at 1275.101 kb on + strand, within GFF1173 at 1275.102 kb on - strand, within GFF1173 at 1275.102 kb on - strand, within GFF1173 at 1275.102 kb on - strand, within GFF1173 at 1275.102 kb on - strand, within GFF1173 at 1275.120 kb on + strand, within GFF1173 at 1275.121 kb on - strand, within GFF1173 at 1275.121 kb on - strand, within GFF1173 at 1275.218 kb on + strand, within GFF1173 at 1275.218 kb on + strand, within GFF1173 at 1275.218 kb on + strand, within GFF1173 at 1275.218 kb on + strand, within GFF1173 at 1275.218 kb on + strand, within GFF1173 at 1275.219 kb on - strand, within GFF1173 at 1275.219 kb on - strand, within GFF1173 at 1275.219 kb on - strand, within GFF1173 at 1275.284 kb on + strand, within GFF1173 at 1275.422 kb on + strand, within GFF1173 at 1275.422 kb on + strand, within GFF1173
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 1,272,944 + -0.6 1,272,944 + -1.1 1,273,212 + GFF1171 0.31 +1.0 1,273,213 - GFF1171 0.31 -0.6 1,273,213 - GFF1171 0.31 -0.2 1,273,233 + GFF1171 0.34 +0.2 1,273,234 - GFF1171 0.34 +0.1 1,273,234 - GFF1171 0.34 +0.3 1,273,234 - GFF1171 0.34 -1.1 1,273,234 - GFF1171 0.34 +0.1 1,273,234 - GFF1171 0.34 -0.1 1,273,441 - GFF1171 0.62 -0.4 1,273,441 - GFF1171 0.62 -0.7 1,273,441 - GFF1171 0.62 -0.2 1,273,441 - GFF1171 0.62 -0.3 1,273,495 - GFF1171 0.69 +0.0 1,273,830 + +0.1 1,273,831 - +2.1 1,273,856 + +0.8 1,273,876 - -0.2 1,273,891 - -0.0 1,273,891 - +0.4 1,273,977 + GFF1172 0.16 +0.1 1,273,977 + GFF1172 0.16 -0.6 1,273,977 + GFF1172 0.16 +1.5 1,273,977 + GFF1172 0.16 +2.3 1,273,978 - GFF1172 0.16 +0.3 1,273,978 - GFF1172 0.16 -0.7 1,273,987 - GFF1172 0.17 +0.1 1,273,987 - GFF1172 0.17 -0.5 1,274,250 + GFF1172 0.48 -0.9 1,274,331 + GFF1172 0.57 +0.4 1,274,332 - GFF1172 0.57 -0.4 1,274,936 + GFF1173 0.25 +0.4 1,274,936 + GFF1173 0.25 -1.7 1,275,101 + GFF1173 0.41 -0.1 1,275,102 - GFF1173 0.41 -0.9 1,275,102 - GFF1173 0.41 +1.0 1,275,102 - GFF1173 0.41 +0.2 1,275,102 - GFF1173 0.41 +0.3 1,275,120 + GFF1173 0.43 +1.3 1,275,121 - GFF1173 0.43 +0.0 1,275,121 - GFF1173 0.43 -0.1 1,275,218 + GFF1173 0.53 +0.1 1,275,218 + GFF1173 0.53 -0.2 1,275,218 + GFF1173 0.53 -0.5 1,275,218 + GFF1173 0.53 -0.2 1,275,218 + GFF1173 0.53 +0.2 1,275,219 - GFF1173 0.53 -0.4 1,275,219 - GFF1173 0.53 -0.1 1,275,219 - GFF1173 0.53 +0.1 1,275,284 + GFF1173 0.60 -0.5 1,275,422 + GFF1173 0.74 -0.6 1,275,422 + GFF1173 0.74 -0.3
Or see this region's nucleotide sequence