Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF112 and GFF113 overlap by 1 nucleotides GFF113 and GFF114 are separated by 95 nucleotides GFF114 and GFF115 overlap by 1 nucleotides
GFF112 - Penicillin-insensitive murein endopeptidase, at 122,313 to 123,194
GFF112
GFF113 - hypothetical protein, at 123,194 to 124,198
GFF113
GFF114 - Sugar fermentation stimulation protein A, at 124,294 to 125,007
GFF114
GFF115 - hypothetical protein, at 125,007 to 125,573
GFF115
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1
2 at 123.439 kb on - strand, within GFF113 at 123.439 kb on - strand, within GFF113 at 124.042 kb on - strand, within GFF113 at 124.406 kb on + strand, within GFF114 at 124.406 kb on + strand, within GFF114 at 124.407 kb on - strand, within GFF114 at 124.464 kb on + strand, within GFF114 at 124.465 kb on - strand, within GFF114 at 124.465 kb on - strand, within GFF114 at 124.465 kb on - strand, within GFF114 at 124.466 kb on + strand, within GFF114 at 124.466 kb on + strand, within GFF114 at 124.467 kb on - strand, within GFF114 at 124.467 kb on - strand, within GFF114 at 124.467 kb on - strand, within GFF114 at 124.467 kb on - strand, within GFF114 at 124.662 kb on - strand, within GFF114 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.135 kb on - strand, within GFF115 at 125.135 kb on - strand, within GFF115 at 125.135 kb on - strand, within GFF115
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 123,439 - GFF113 0.24 -0.0 123,439 - GFF113 0.24 -0.9 124,042 - GFF113 0.84 -1.3 124,406 + GFF114 0.16 -0.1 124,406 + GFF114 0.16 -0.3 124,407 - GFF114 0.16 -0.4 124,464 + GFF114 0.24 +0.1 124,465 - GFF114 0.24 +0.8 124,465 - GFF114 0.24 -0.2 124,465 - GFF114 0.24 -0.3 124,466 + GFF114 0.24 -0.3 124,466 + GFF114 0.24 -0.6 124,467 - GFF114 0.24 +0.9 124,467 - GFF114 0.24 -0.3 124,467 - GFF114 0.24 +0.5 124,467 - GFF114 0.24 +1.8 124,662 - GFF114 0.52 +0.4 125,134 + GFF115 0.22 -0.2 125,134 + GFF115 0.22 +1.3 125,134 + GFF115 0.22 -0.8 125,134 + GFF115 0.22 -0.5 125,134 + GFF115 0.22 -0.2 125,135 - GFF115 0.23 +1.2 125,135 - GFF115 0.23 -0.5 125,135 - GFF115 0.23 -0.6
Or see this region's nucleotide sequence