Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09715

Experiment: R2A_low_K2HPO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09705 and ABZR88_RS09710 are separated by 330 nucleotidesABZR88_RS09710 and ABZR88_RS09715 are separated by 38 nucleotidesABZR88_RS09715 and ABZR88_RS09720 are separated by 51 nucleotidesABZR88_RS09720 and ABZR88_RS09725 are separated by 243 nucleotides ABZR88_RS09705: ABZR88_RS09705 - helix-turn-helix domain-containing protein, at 2,423,071 to 2,423,706 _RS09705 ABZR88_RS09710: ABZR88_RS09710 - hypothetical protein, at 2,424,037 to 2,424,567 _RS09710 ABZR88_RS09715: ABZR88_RS09715 - site-specific integrase, at 2,424,606 to 2,425,775 _RS09715 ABZR88_RS09720: ABZR88_RS09720 - tRNA-His, at 2,425,827 to 2,425,900 _RS09720 ABZR88_RS09725: ABZR88_RS09725 - DUF6252 family protein, at 2,426,144 to 2,426,605 _RS09725 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -1 0 1 2at 2423.639 kb on - strand, within ABZR88_RS09705at 2423.683 kb on - strandat 2423.701 kb on - strandat 2423.704 kb on + strandat 2423.749 kb on - strandat 2423.752 kb on - strandat 2423.791 kb on - strandat 2423.880 kb on + strandat 2423.883 kb on + strandat 2424.011 kb on + strandat 2424.097 kb on + strand, within ABZR88_RS09710at 2424.170 kb on - strand, within ABZR88_RS09710at 2424.170 kb on - strand, within ABZR88_RS09710at 2424.513 kb on + strand, within ABZR88_RS09710at 2424.527 kb on - strandat 2424.528 kb on + strandat 2424.570 kb on - strandat 2424.702 kb on + strandat 2424.901 kb on - strand, within ABZR88_RS09715at 2424.921 kb on + strand, within ABZR88_RS09715at 2424.934 kb on - strand, within ABZR88_RS09715at 2424.951 kb on + strand, within ABZR88_RS09715at 2424.977 kb on + strand, within ABZR88_RS09715at 2424.977 kb on + strand, within ABZR88_RS09715at 2425.137 kb on + strand, within ABZR88_RS09715at 2425.153 kb on + strand, within ABZR88_RS09715at 2425.193 kb on + strand, within ABZR88_RS09715at 2425.216 kb on + strand, within ABZR88_RS09715at 2425.277 kb on - strand, within ABZR88_RS09715at 2425.277 kb on - strand, within ABZR88_RS09715at 2425.412 kb on + strand, within ABZR88_RS09715at 2425.456 kb on - strand, within ABZR88_RS09715at 2425.546 kb on - strand, within ABZR88_RS09715at 2425.569 kb on - strand, within ABZR88_RS09715at 2425.682 kb on + strandat 2425.712 kb on - strandat 2425.724 kb on - strandat 2425.749 kb on - strandat 2425.812 kb on + strandat 2425.833 kb on - strandat 2425.989 kb on + strandat 2426.067 kb on - strandat 2426.119 kb on + strandat 2426.137 kb on - strandat 2426.248 kb on + strand, within ABZR88_RS09725at 2426.249 kb on - strand, within ABZR88_RS09725at 2426.320 kb on - strand, within ABZR88_RS09725at 2426.330 kb on - strand, within ABZR88_RS09725at 2426.330 kb on - strand, within ABZR88_RS09725at 2426.420 kb on + strand, within ABZR88_RS09725at 2426.570 kb on + strandat 2426.594 kb on + strandat 2426.651 kb on - strandat 2426.686 kb on - strandat 2426.686 kb on - strandat 2426.729 kb on - strandat 2426.751 kb on - strandat 2426.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_low_K2HPO4
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2,423,639 - ABZR88_RS09705 0.89 -0.0
2,423,683 - -0.2
2,423,701 - +0.2
2,423,704 + -0.1
2,423,749 - +0.0
2,423,752 - -0.1
2,423,791 - +1.5
2,423,880 + -0.2
2,423,883 + -0.1
2,424,011 + -0.1
2,424,097 + ABZR88_RS09710 0.11 +0.1
2,424,170 - ABZR88_RS09710 0.25 +0.1
2,424,170 - ABZR88_RS09710 0.25 -0.1
2,424,513 + ABZR88_RS09710 0.90 -0.0
2,424,527 - +0.3
2,424,528 + +0.0
2,424,570 - -0.8
2,424,702 + -0.2
2,424,901 - ABZR88_RS09715 0.25 -0.3
2,424,921 + ABZR88_RS09715 0.27 +0.0
2,424,934 - ABZR88_RS09715 0.28 +0.0
2,424,951 + ABZR88_RS09715 0.29 -0.0
2,424,977 + ABZR88_RS09715 0.32 -0.2
2,424,977 + ABZR88_RS09715 0.32 -0.0
2,425,137 + ABZR88_RS09715 0.45 +0.0
2,425,153 + ABZR88_RS09715 0.47 +0.1
2,425,193 + ABZR88_RS09715 0.50 +0.2
2,425,216 + ABZR88_RS09715 0.52 -0.0
2,425,277 - ABZR88_RS09715 0.57 -0.0
2,425,277 - ABZR88_RS09715 0.57 +1.2
2,425,412 + ABZR88_RS09715 0.69 +0.1
2,425,456 - ABZR88_RS09715 0.73 -0.1
2,425,546 - ABZR88_RS09715 0.80 -0.1
2,425,569 - ABZR88_RS09715 0.82 +0.0
2,425,682 + -0.1
2,425,712 - -0.2
2,425,724 - -0.2
2,425,749 - +0.4
2,425,812 + +0.2
2,425,833 - +0.1
2,425,989 + +1.9
2,426,067 - -0.1
2,426,119 + -0.4
2,426,137 - -0.7
2,426,248 + ABZR88_RS09725 0.23 -0.5
2,426,249 - ABZR88_RS09725 0.23 -0.2
2,426,320 - ABZR88_RS09725 0.38 -0.1
2,426,330 - ABZR88_RS09725 0.40 -1.0
2,426,330 - ABZR88_RS09725 0.40 -0.1
2,426,420 + ABZR88_RS09725 0.60 -1.1
2,426,570 + -0.1
2,426,594 + -0.1
2,426,651 - +0.5
2,426,686 - +0.0
2,426,686 - -0.5
2,426,729 - -0.1
2,426,751 - +0.2
2,426,751 - +0.0

Or see this region's nucleotide sequence