Experiment: R2A_low_K2HPO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02760 and ABZR88_RS02765 are separated by 73 nucleotides ABZR88_RS02765 and ABZR88_RS02770 are separated by 87 nucleotides ABZR88_RS02770 and ABZR88_RS02775 are separated by 85 nucleotides ABZR88_RS02775 and ABZR88_RS02780 overlap by 11 nucleotides ABZR88_RS02780 and ABZR88_RS02785 are separated by 53 nucleotides
ABZR88_RS02760: ABZR88_RS02760 - pyridoxal phosphate-dependent aminotransferase family protein, at 649,455 to 650,570
_RS02760
ABZR88_RS02765: ABZR88_RS02765 - periplasmic heavy metal sensor, at 650,644 to 651,057
_RS02765
ABZR88_RS02770: ABZR88_RS02770 - LexA family transcriptional regulator, at 651,145 to 651,924
_RS02770
ABZR88_RS02775: ABZR88_RS02775 - nuclease, at 652,010 to 652,369
_RS02775
ABZR88_RS02780: ABZR88_RS02780 - peptide-methionine (R)-S-oxide reductase MsrB, at 652,359 to 652,844
_RS02780
ABZR88_RS02785: ABZR88_RS02785 - fasciclin domain-containing protein, at 652,898 to 653,482
_RS02785
Position (kb) 651
652 Strain fitness (log2 ratio) -1
0
1 at 650.147 kb on + strand, within ABZR88_RS02760 at 650.188 kb on - strand, within ABZR88_RS02760 at 650.624 kb on - strand at 651.037 kb on + strand at 651.105 kb on - strand at 651.128 kb on - strand at 651.129 kb on + strand at 651.151 kb on - strand at 651.151 kb on - strand at 651.176 kb on - strand at 651.619 kb on - strand, within ABZR88_RS02770 at 651.738 kb on + strand, within ABZR88_RS02770 at 652.025 kb on + strand at 652.032 kb on + strand at 652.052 kb on - strand, within ABZR88_RS02775 at 652.083 kb on + strand, within ABZR88_RS02775 at 652.210 kb on - strand, within ABZR88_RS02775 at 652.288 kb on - strand, within ABZR88_RS02775 at 652.368 kb on - strand at 652.589 kb on + strand, within ABZR88_RS02780 at 652.621 kb on + strand, within ABZR88_RS02780 at 652.697 kb on - strand, within ABZR88_RS02780 at 652.797 kb on + strand at 652.825 kb on - strand at 652.844 kb on + strand at 652.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_low_K2HPO4 remove 650,147 + ABZR88_RS02760 0.62 +0.0 650,188 - ABZR88_RS02760 0.66 -0.3 650,624 - -0.2 651,037 + +0.1 651,105 - -0.1 651,128 - -0.0 651,129 + -0.1 651,151 - -0.1 651,151 - -0.2 651,176 - +0.0 651,619 - ABZR88_RS02770 0.61 +0.7 651,738 + ABZR88_RS02770 0.76 +0.5 652,025 + +0.1 652,032 + -0.2 652,052 - ABZR88_RS02775 0.12 -0.2 652,083 + ABZR88_RS02775 0.20 -0.2 652,210 - ABZR88_RS02775 0.56 -0.5 652,288 - ABZR88_RS02775 0.77 +0.1 652,368 - -0.1 652,589 + ABZR88_RS02780 0.47 -0.1 652,621 + ABZR88_RS02780 0.54 -0.3 652,697 - ABZR88_RS02780 0.70 -0.1 652,797 + -0.0 652,825 - +0.2 652,844 + +0.2 652,906 + -0.1
Or see this region's nucleotide sequence