Experiment: biofilm; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18920 and LRK53_RS18925 overlap by 4 nucleotides LRK53_RS18925 and LRK53_RS18930 overlap by 22 nucleotides LRK53_RS18930 and LRK53_RS18935 overlap by 1 nucleotides LRK53_RS18935 and LRK53_RS18940 are separated by 121 nucleotides
LRK53_RS18920: LRK53_RS18920 - S49 family peptidase, at 180,300 to 181,295
_RS18920
LRK53_RS18925: LRK53_RS18925 - hypothetical protein, at 181,292 to 181,768
_RS18925
LRK53_RS18930: LRK53_RS18930 - hypothetical protein, at 181,747 to 182,415
_RS18930
LRK53_RS18935: LRK53_RS18935 - PD-(D/E)XK nuclease family protein, at 182,415 to 183,017
_RS18935
LRK53_RS18940: LRK53_RS18940 - hypothetical protein, at 183,139 to 183,600
_RS18940
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.762 kb on + strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.763 kb on - strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.798 kb on + strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.799 kb on - strand, within LRK53_RS18920 at 180.829 kb on - strand, within LRK53_RS18920 at 180.829 kb on - strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.840 kb on + strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.841 kb on - strand, within LRK53_RS18920 at 180.876 kb on + strand, within LRK53_RS18920 at 180.877 kb on - strand, within LRK53_RS18920 at 180.877 kb on - strand, within LRK53_RS18920 at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.316 kb on + strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.317 kb on - strand at 181.382 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.619 kb on + strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.620 kb on - strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.622 kb on + strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.623 kb on - strand, within LRK53_RS18925 at 181.787 kb on + strand at 181.787 kb on + strand at 181.788 kb on - strand at 181.788 kb on - strand at 181.872 kb on + strand, within LRK53_RS18930 at 181.873 kb on - strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.092 kb on + strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.093 kb on - strand, within LRK53_RS18930 at 182.237 kb on - strand, within LRK53_RS18930 at 182.237 kb on - strand, within LRK53_RS18930 at 182.237 kb on - strand, within LRK53_RS18930 at 182.349 kb on + strand at 182.349 kb on + strand at 182.350 kb on - strand at 182.460 kb on + strand at 182.460 kb on + strand at 182.460 kb on + strand at 182.460 kb on + strand at 182.461 kb on - strand at 182.461 kb on - strand at 182.461 kb on - strand at 182.461 kb on - strand at 182.461 kb on - strand at 182.520 kb on + strand, within LRK53_RS18935 at 182.520 kb on + strand, within LRK53_RS18935 at 182.520 kb on + strand, within LRK53_RS18935 at 182.521 kb on - strand, within LRK53_RS18935 at 182.521 kb on - strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.589 kb on + strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.590 kb on - strand, within LRK53_RS18935 at 182.664 kb on + strand, within LRK53_RS18935 at 182.664 kb on + strand, within LRK53_RS18935 at 182.664 kb on + strand, within LRK53_RS18935 at 182.664 kb on + strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.665 kb on - strand, within LRK53_RS18935 at 182.709 kb on + strand, within LRK53_RS18935 at 182.798 kb on + strand, within LRK53_RS18935 at 182.799 kb on - strand, within LRK53_RS18935 at 182.799 kb on - strand, within LRK53_RS18935 at 182.799 kb on - strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.829 kb on + strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.830 kb on - strand, within LRK53_RS18935 at 182.883 kb on + strand, within LRK53_RS18935 at 182.956 kb on - strand, within LRK53_RS18935 at 183.133 kb on + strand at 183.134 kb on - strand at 183.134 kb on - strand at 183.134 kb on - strand at 183.134 kb on - strand at 183.310 kb on + strand, within LRK53_RS18940 at 183.310 kb on + strand, within LRK53_RS18940 at 183.310 kb on + strand, within LRK53_RS18940 at 183.310 kb on + strand, within LRK53_RS18940 at 183.310 kb on + strand, within LRK53_RS18940 at 183.311 kb on - strand, within LRK53_RS18940 at 183.311 kb on - strand, within LRK53_RS18940 at 183.311 kb on - strand, within LRK53_RS18940 at 183.325 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.397 kb on + strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940 at 183.398 kb on - strand, within LRK53_RS18940
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; remove 180,762 + LRK53_RS18920 0.46 -0.1 180,762 + LRK53_RS18920 0.46 -1.5 180,762 + LRK53_RS18920 0.46 -1.5 180,762 + LRK53_RS18920 0.46 -1.5 180,762 + LRK53_RS18920 0.46 +0.7 180,762 + LRK53_RS18920 0.46 -0.4 180,762 + LRK53_RS18920 0.46 -1.7 180,762 + LRK53_RS18920 0.46 -1.3 180,763 - LRK53_RS18920 0.46 -0.1 180,763 - LRK53_RS18920 0.46 -1.1 180,763 - LRK53_RS18920 0.46 -0.6 180,763 - LRK53_RS18920 0.46 +1.2 180,763 - LRK53_RS18920 0.46 -1.7 180,763 - LRK53_RS18920 0.46 -0.1 180,763 - LRK53_RS18920 0.46 -2.7 180,763 - LRK53_RS18920 0.46 -0.5 180,763 - LRK53_RS18920 0.46 -1.3 180,763 - LRK53_RS18920 0.46 -1.8 180,763 - LRK53_RS18920 0.46 -2.0 180,798 + LRK53_RS18920 0.50 -1.5 180,798 + LRK53_RS18920 0.50 -2.2 180,798 + LRK53_RS18920 0.50 -1.5 180,798 + LRK53_RS18920 0.50 -0.3 180,799 - LRK53_RS18920 0.50 +0.2 180,799 - LRK53_RS18920 0.50 -1.3 180,799 - LRK53_RS18920 0.50 -0.4 180,799 - LRK53_RS18920 0.50 +0.7 180,799 - LRK53_RS18920 0.50 +0.1 180,799 - LRK53_RS18920 0.50 +0.5 180,829 - LRK53_RS18920 0.53 +1.2 180,829 - LRK53_RS18920 0.53 -0.0 180,840 + LRK53_RS18920 0.54 +0.3 180,840 + LRK53_RS18920 0.54 -2.5 180,840 + LRK53_RS18920 0.54 -1.5 180,840 + LRK53_RS18920 0.54 -1.9 180,841 - LRK53_RS18920 0.54 -2.0 180,841 - LRK53_RS18920 0.54 -1.5 180,841 - LRK53_RS18920 0.54 -0.4 180,841 - LRK53_RS18920 0.54 -1.7 180,841 - LRK53_RS18920 0.54 -1.1 180,841 - LRK53_RS18920 0.54 -0.5 180,876 + LRK53_RS18920 0.58 -0.3 180,877 - LRK53_RS18920 0.58 +1.0 180,877 - LRK53_RS18920 0.58 -2.6 181,316 + +1.7 181,316 + -0.7 181,316 + +0.3 181,316 + +0.9 181,316 + -1.3 181,316 + -0.1 181,317 - -2.2 181,317 - +0.0 181,317 - -0.3 181,317 - +1.9 181,317 - -1.3 181,317 - -0.7 181,317 - -0.6 181,317 - -0.8 181,317 - -2.0 181,382 + LRK53_RS18925 0.19 -0.8 181,619 + LRK53_RS18925 0.69 -1.2 181,619 + LRK53_RS18925 0.69 -1.3 181,619 + LRK53_RS18925 0.69 +0.2 181,619 + LRK53_RS18925 0.69 +2.5 181,619 + LRK53_RS18925 0.69 -1.8 181,619 + LRK53_RS18925 0.69 -2.7 181,619 + LRK53_RS18925 0.69 -0.4 181,619 + LRK53_RS18925 0.69 -0.5 181,619 + LRK53_RS18925 0.69 +0.7 181,619 + LRK53_RS18925 0.69 +0.5 181,620 - LRK53_RS18925 0.69 -1.3 181,620 - LRK53_RS18925 0.69 +2.4 181,620 - LRK53_RS18925 0.69 -0.4 181,620 - LRK53_RS18925 0.69 +0.1 181,620 - LRK53_RS18925 0.69 -1.3 181,620 - LRK53_RS18925 0.69 -0.8 181,620 - LRK53_RS18925 0.69 -1.8 181,620 - LRK53_RS18925 0.69 -2.2 181,622 + LRK53_RS18925 0.69 -0.1 181,622 + LRK53_RS18925 0.69 -1.8 181,622 + LRK53_RS18925 0.69 -0.7 181,622 + LRK53_RS18925 0.69 -1.6 181,622 + LRK53_RS18925 0.69 -0.6 181,622 + LRK53_RS18925 0.69 +1.0 181,623 - LRK53_RS18925 0.69 -2.0 181,623 - LRK53_RS18925 0.69 +0.5 181,623 - LRK53_RS18925 0.69 -0.2 181,623 - LRK53_RS18925 0.69 -0.3 181,623 - LRK53_RS18925 0.69 +1.0 181,623 - LRK53_RS18925 0.69 -0.1 181,787 + -0.1 181,787 + +0.3 181,788 - +0.2 181,788 - -1.0 181,872 + LRK53_RS18930 0.19 -0.6 181,873 - LRK53_RS18930 0.19 -1.3 182,092 + LRK53_RS18930 0.52 -2.7 182,092 + LRK53_RS18930 0.52 -2.0 182,092 + LRK53_RS18930 0.52 -0.2 182,092 + LRK53_RS18930 0.52 -0.3 182,093 - LRK53_RS18930 0.52 -1.6 182,093 - LRK53_RS18930 0.52 -0.6 182,093 - LRK53_RS18930 0.52 -0.1 182,093 - LRK53_RS18930 0.52 +0.1 182,093 - LRK53_RS18930 0.52 -1.7 182,237 - LRK53_RS18930 0.73 -1.7 182,237 - LRK53_RS18930 0.73 -0.2 182,237 - LRK53_RS18930 0.73 -1.9 182,349 + -1.4 182,349 + -1.1 182,350 - -1.5 182,460 + -1.8 182,460 + -0.1 182,460 + -1.5 182,460 + -1.0 182,461 - -0.6 182,461 - +0.2 182,461 - -2.6 182,461 - -1.6 182,461 - -0.6 182,520 + LRK53_RS18935 0.17 -0.3 182,520 + LRK53_RS18935 0.17 -0.1 182,520 + LRK53_RS18935 0.17 -0.5 182,521 - LRK53_RS18935 0.18 -1.5 182,521 - LRK53_RS18935 0.18 -2.3 182,589 + LRK53_RS18935 0.29 -1.0 182,589 + LRK53_RS18935 0.29 +0.7 182,589 + LRK53_RS18935 0.29 +0.5 182,589 + LRK53_RS18935 0.29 -0.2 182,589 + LRK53_RS18935 0.29 -0.5 182,589 + LRK53_RS18935 0.29 -3.4 182,589 + LRK53_RS18935 0.29 +1.1 182,589 + LRK53_RS18935 0.29 +0.1 182,589 + LRK53_RS18935 0.29 +1.2 182,589 + LRK53_RS18935 0.29 -2.0 182,590 - LRK53_RS18935 0.29 -1.3 182,590 - LRK53_RS18935 0.29 -0.4 182,590 - LRK53_RS18935 0.29 +0.0 182,590 - LRK53_RS18935 0.29 +1.2 182,590 - LRK53_RS18935 0.29 -0.7 182,590 - LRK53_RS18935 0.29 -2.5 182,590 - LRK53_RS18935 0.29 -2.2 182,590 - LRK53_RS18935 0.29 -0.8 182,590 - LRK53_RS18935 0.29 +0.6 182,590 - LRK53_RS18935 0.29 -0.6 182,590 - LRK53_RS18935 0.29 -1.3 182,664 + LRK53_RS18935 0.41 -1.7 182,664 + LRK53_RS18935 0.41 +0.7 182,664 + LRK53_RS18935 0.41 -0.7 182,664 + LRK53_RS18935 0.41 -1.8 182,665 - LRK53_RS18935 0.41 -0.3 182,665 - LRK53_RS18935 0.41 -2.5 182,665 - LRK53_RS18935 0.41 -0.3 182,665 - LRK53_RS18935 0.41 -1.1 182,665 - LRK53_RS18935 0.41 -2.7 182,665 - LRK53_RS18935 0.41 -0.5 182,665 - LRK53_RS18935 0.41 +1.5 182,665 - LRK53_RS18935 0.41 -2.0 182,665 - LRK53_RS18935 0.41 -0.8 182,709 + LRK53_RS18935 0.49 -1.7 182,798 + LRK53_RS18935 0.64 +0.2 182,799 - LRK53_RS18935 0.64 -1.7 182,799 - LRK53_RS18935 0.64 +0.5 182,799 - LRK53_RS18935 0.64 -1.3 182,829 + LRK53_RS18935 0.69 -0.9 182,829 + LRK53_RS18935 0.69 -0.7 182,829 + LRK53_RS18935 0.69 -1.7 182,829 + LRK53_RS18935 0.69 -2.2 182,829 + LRK53_RS18935 0.69 -0.1 182,829 + LRK53_RS18935 0.69 +2.1 182,829 + LRK53_RS18935 0.69 -0.8 182,829 + LRK53_RS18935 0.69 -2.1 182,829 + LRK53_RS18935 0.69 -1.5 182,830 - LRK53_RS18935 0.69 -0.5 182,830 - LRK53_RS18935 0.69 -1.2 182,830 - LRK53_RS18935 0.69 -1.1 182,830 - LRK53_RS18935 0.69 +0.0 182,830 - LRK53_RS18935 0.69 +1.8 182,830 - LRK53_RS18935 0.69 -0.5 182,830 - LRK53_RS18935 0.69 -0.7 182,883 + LRK53_RS18935 0.78 +0.0 182,956 - LRK53_RS18935 0.90 +1.2 183,133 + +0.2 183,134 - -0.4 183,134 - -1.1 183,134 - +0.5 183,134 - -2.7 183,310 + LRK53_RS18940 0.37 -2.1 183,310 + LRK53_RS18940 0.37 -1.3 183,310 + LRK53_RS18940 0.37 -1.6 183,310 + LRK53_RS18940 0.37 -1.4 183,310 + LRK53_RS18940 0.37 -1.5 183,311 - LRK53_RS18940 0.37 +2.2 183,311 - LRK53_RS18940 0.37 +0.0 183,311 - LRK53_RS18940 0.37 -1.2 183,325 + LRK53_RS18940 0.40 -1.0 183,397 + LRK53_RS18940 0.56 -0.1 183,397 + LRK53_RS18940 0.56 -0.5 183,397 + LRK53_RS18940 0.56 -0.8 183,397 + LRK53_RS18940 0.56 -2.4 183,397 + LRK53_RS18940 0.56 -0.8 183,397 + LRK53_RS18940 0.56 -0.8 183,397 + LRK53_RS18940 0.56 +0.6 183,397 + LRK53_RS18940 0.56 +1.3 183,397 + LRK53_RS18940 0.56 -1.0 183,397 + LRK53_RS18940 0.56 +0.5 183,398 - LRK53_RS18940 0.56 +0.2 183,398 - LRK53_RS18940 0.56 -2.1 183,398 - LRK53_RS18940 0.56 -0.4 183,398 - LRK53_RS18940 0.56 -0.6 183,398 - LRK53_RS18940 0.56 -0.4 183,398 - LRK53_RS18940 0.56 -0.8 183,398 - LRK53_RS18940 0.56 -2.6 183,398 - LRK53_RS18940 0.56 -0.1 183,398 - LRK53_RS18940 0.56 +0.2 183,398 - LRK53_RS18940 0.56 +1.5 183,398 - LRK53_RS18940 0.56 -1.5 183,398 - LRK53_RS18940 0.56 +0.7
Or see this region's nucleotide sequence