Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18710

Experiment: biofilm; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18705 and LRK53_RS18710 are separated by 90 nucleotidesLRK53_RS18710 and LRK53_RS18715 are separated by 247 nucleotides LRK53_RS18705: LRK53_RS18705 - hypothetical protein, at 128,468 to 129,379 _RS18705 LRK53_RS18710: LRK53_RS18710 - DNA-binding protein, at 129,470 to 131,188 _RS18710 LRK53_RS18715: LRK53_RS18715 - hypothetical protein, at 131,436 to 132,440 _RS18715 Position (kb) 129 130 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 128.498 kb on + strandat 128.498 kb on + strandat 128.498 kb on + strandat 128.499 kb on - strandat 128.540 kb on + strandat 128.540 kb on + strandat 128.541 kb on - strandat 128.541 kb on - strandat 128.541 kb on - strandat 128.541 kb on - strandat 128.541 kb on - strandat 128.629 kb on + strand, within LRK53_RS18705at 128.629 kb on + strand, within LRK53_RS18705at 128.629 kb on + strand, within LRK53_RS18705at 128.629 kb on + strand, within LRK53_RS18705at 128.629 kb on + strand, within LRK53_RS18705at 128.629 kb on + strand, within LRK53_RS18705at 128.629 kb on + strand, within LRK53_RS18705at 128.630 kb on - strand, within LRK53_RS18705at 128.630 kb on - strand, within LRK53_RS18705at 128.630 kb on - strand, within LRK53_RS18705at 128.630 kb on - strand, within LRK53_RS18705at 128.630 kb on - strand, within LRK53_RS18705at 128.630 kb on - strand, within LRK53_RS18705at 128.700 kb on + strand, within LRK53_RS18705at 128.700 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.728 kb on + strand, within LRK53_RS18705at 128.729 kb on - strand, within LRK53_RS18705at 128.729 kb on - strand, within LRK53_RS18705at 128.729 kb on - strand, within LRK53_RS18705at 128.729 kb on - strand, within LRK53_RS18705at 128.729 kb on - strand, within LRK53_RS18705at 128.909 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.929 kb on + strand, within LRK53_RS18705at 128.930 kb on - strand, within LRK53_RS18705at 128.930 kb on - strand, within LRK53_RS18705at 128.930 kb on - strand, within LRK53_RS18705at 128.930 kb on - strand, within LRK53_RS18705at 128.930 kb on - strand, within LRK53_RS18705at 129.006 kb on - strand, within LRK53_RS18705at 129.041 kb on + strand, within LRK53_RS18705at 129.041 kb on + strand, within LRK53_RS18705at 129.169 kb on - strand, within LRK53_RS18705at 129.172 kb on + strand, within LRK53_RS18705at 129.172 kb on + strand, within LRK53_RS18705at 129.172 kb on + strand, within LRK53_RS18705at 129.172 kb on + strand, within LRK53_RS18705at 129.173 kb on - strand, within LRK53_RS18705at 129.412 kb on - strandat 129.412 kb on - strandat 130.368 kb on + strand, within LRK53_RS18710at 130.368 kb on + strand, within LRK53_RS18710at 130.515 kb on + strand, within LRK53_RS18710at 130.516 kb on - strand, within LRK53_RS18710at 130.516 kb on - strand, within LRK53_RS18710at 130.516 kb on - strand, within LRK53_RS18710at 130.516 kb on - strand, within LRK53_RS18710at 130.575 kb on + strand, within LRK53_RS18710at 130.575 kb on + strand, within LRK53_RS18710at 130.575 kb on + strand, within LRK53_RS18710at 130.575 kb on + strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.576 kb on - strand, within LRK53_RS18710at 130.644 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.821 kb on + strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.822 kb on - strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.929 kb on + strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 130.930 kb on - strand, within LRK53_RS18710at 131.244 kb on + strandat 131.244 kb on + strandat 131.244 kb on + strandat 131.244 kb on + strandat 131.244 kb on + strandat 131.244 kb on + strandat 131.245 kb on - strandat 131.245 kb on - strandat 131.286 kb on + strandat 131.346 kb on + strandat 131.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
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128,498 + +0.3
128,498 + -0.0
128,498 + +0.5
128,499 - -0.7
128,540 + +0.8
128,540 + +1.5
128,541 - -1.1
128,541 - -1.5
128,541 - -0.8
128,541 - +0.2
128,541 - -1.8
128,629 + LRK53_RS18705 0.18 -1.5
128,629 + LRK53_RS18705 0.18 +0.8
128,629 + LRK53_RS18705 0.18 -1.3
128,629 + LRK53_RS18705 0.18 -0.5
128,629 + LRK53_RS18705 0.18 -1.4
128,629 + LRK53_RS18705 0.18 +0.7
128,629 + LRK53_RS18705 0.18 -1.0
128,630 - LRK53_RS18705 0.18 +1.3
128,630 - LRK53_RS18705 0.18 +1.7
128,630 - LRK53_RS18705 0.18 +0.9
128,630 - LRK53_RS18705 0.18 -2.0
128,630 - LRK53_RS18705 0.18 -0.3
128,630 - LRK53_RS18705 0.18 -2.0
128,700 + LRK53_RS18705 0.25 -1.5
128,700 + LRK53_RS18705 0.25 +0.2
128,728 + LRK53_RS18705 0.29 -2.3
128,728 + LRK53_RS18705 0.29 -2.8
128,728 + LRK53_RS18705 0.29 -2.0
128,728 + LRK53_RS18705 0.29 -2.0
128,728 + LRK53_RS18705 0.29 +0.5
128,728 + LRK53_RS18705 0.29 -0.5
128,728 + LRK53_RS18705 0.29 -1.3
128,729 - LRK53_RS18705 0.29 -2.1
128,729 - LRK53_RS18705 0.29 -1.8
128,729 - LRK53_RS18705 0.29 +0.6
128,729 - LRK53_RS18705 0.29 +0.0
128,729 - LRK53_RS18705 0.29 -0.5
128,909 + LRK53_RS18705 0.48 +0.7
128,929 + LRK53_RS18705 0.51 -0.7
128,929 + LRK53_RS18705 0.51 -0.0
128,929 + LRK53_RS18705 0.51 -0.1
128,929 + LRK53_RS18705 0.51 -1.8
128,929 + LRK53_RS18705 0.51 +0.1
128,929 + LRK53_RS18705 0.51 -0.7
128,929 + LRK53_RS18705 0.51 -0.5
128,930 - LRK53_RS18705 0.51 -2.4
128,930 - LRK53_RS18705 0.51 -0.5
128,930 - LRK53_RS18705 0.51 -0.4
128,930 - LRK53_RS18705 0.51 -1.9
128,930 - LRK53_RS18705 0.51 -1.3
129,006 - LRK53_RS18705 0.59 -2.0
129,041 + LRK53_RS18705 0.63 -3.8
129,041 + LRK53_RS18705 0.63 -0.8
129,169 - LRK53_RS18705 0.77 -1.6
129,172 + LRK53_RS18705 0.77 -1.1
129,172 + LRK53_RS18705 0.77 -0.8
129,172 + LRK53_RS18705 0.77 -1.5
129,172 + LRK53_RS18705 0.77 +1.8
129,173 - LRK53_RS18705 0.77 +0.1
129,412 - +1.3
129,412 - -0.5
130,368 + LRK53_RS18710 0.52 -0.8
130,368 + LRK53_RS18710 0.52 -2.8
130,515 + LRK53_RS18710 0.61 -1.0
130,516 - LRK53_RS18710 0.61 -0.7
130,516 - LRK53_RS18710 0.61 -1.7
130,516 - LRK53_RS18710 0.61 -1.1
130,516 - LRK53_RS18710 0.61 +0.2
130,575 + LRK53_RS18710 0.64 +0.6
130,575 + LRK53_RS18710 0.64 -2.1
130,575 + LRK53_RS18710 0.64 -1.4
130,575 + LRK53_RS18710 0.64 -0.2
130,576 - LRK53_RS18710 0.64 -0.3
130,576 - LRK53_RS18710 0.64 -1.7
130,576 - LRK53_RS18710 0.64 +0.3
130,576 - LRK53_RS18710 0.64 -3.1
130,576 - LRK53_RS18710 0.64 +1.5
130,576 - LRK53_RS18710 0.64 -0.4
130,576 - LRK53_RS18710 0.64 -0.6
130,576 - LRK53_RS18710 0.64 +0.3
130,576 - LRK53_RS18710 0.64 -0.8
130,644 + LRK53_RS18710 0.68 -0.2
130,821 + LRK53_RS18710 0.79 -2.7
130,821 + LRK53_RS18710 0.79 -0.4
130,821 + LRK53_RS18710 0.79 -2.1
130,821 + LRK53_RS18710 0.79 -0.3
130,821 + LRK53_RS18710 0.79 +0.0
130,821 + LRK53_RS18710 0.79 -1.1
130,821 + LRK53_RS18710 0.79 -2.3
130,821 + LRK53_RS18710 0.79 -2.3
130,821 + LRK53_RS18710 0.79 -0.2
130,821 + LRK53_RS18710 0.79 +1.1
130,821 + LRK53_RS18710 0.79 -0.1
130,821 + LRK53_RS18710 0.79 -3.0
130,821 + LRK53_RS18710 0.79 -1.4
130,822 - LRK53_RS18710 0.79 -0.5
130,822 - LRK53_RS18710 0.79 -0.4
130,822 - LRK53_RS18710 0.79 +0.7
130,822 - LRK53_RS18710 0.79 +0.6
130,822 - LRK53_RS18710 0.79 -0.9
130,822 - LRK53_RS18710 0.79 -1.4
130,822 - LRK53_RS18710 0.79 -0.2
130,822 - LRK53_RS18710 0.79 -1.1
130,822 - LRK53_RS18710 0.79 -0.7
130,822 - LRK53_RS18710 0.79 +0.2
130,822 - LRK53_RS18710 0.79 -0.8
130,822 - LRK53_RS18710 0.79 +0.6
130,822 - LRK53_RS18710 0.79 -2.7
130,822 - LRK53_RS18710 0.79 -0.7
130,822 - LRK53_RS18710 0.79 +1.5
130,822 - LRK53_RS18710 0.79 +1.5
130,929 + LRK53_RS18710 0.85 -1.4
130,929 + LRK53_RS18710 0.85 -1.1
130,929 + LRK53_RS18710 0.85 -1.2
130,929 + LRK53_RS18710 0.85 -1.2
130,929 + LRK53_RS18710 0.85 +0.8
130,929 + LRK53_RS18710 0.85 -1.0
130,929 + LRK53_RS18710 0.85 -3.2
130,929 + LRK53_RS18710 0.85 -1.5
130,929 + LRK53_RS18710 0.85 -1.9
130,929 + LRK53_RS18710 0.85 +1.1
130,929 + LRK53_RS18710 0.85 -1.4
130,929 + LRK53_RS18710 0.85 +2.9
130,929 + LRK53_RS18710 0.85 +0.4
130,929 + LRK53_RS18710 0.85 -1.1
130,929 + LRK53_RS18710 0.85 +0.4
130,930 - LRK53_RS18710 0.85 -0.0
130,930 - LRK53_RS18710 0.85 -0.3
130,930 - LRK53_RS18710 0.85 +0.3
130,930 - LRK53_RS18710 0.85 -2.2
130,930 - LRK53_RS18710 0.85 -0.6
130,930 - LRK53_RS18710 0.85 +0.3
130,930 - LRK53_RS18710 0.85 +0.7
130,930 - LRK53_RS18710 0.85 -1.2
130,930 - LRK53_RS18710 0.85 -2.0
130,930 - LRK53_RS18710 0.85 +0.8
130,930 - LRK53_RS18710 0.85 -1.7
131,244 + +1.2
131,244 + -1.7
131,244 + -2.9
131,244 + -1.8
131,244 + -2.1
131,244 + -1.9
131,245 - -1.4
131,245 - +0.5
131,286 + -1.2
131,346 + -0.1
131,367 - -1.3

Or see this region's nucleotide sequence