Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03110

Experiment: biofilm; Day2; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03100 and LRK53_RS03105 overlap by 4 nucleotidesLRK53_RS03105 and LRK53_RS03110 are separated by 157 nucleotidesLRK53_RS03110 and LRK53_RS03115 overlap by 4 nucleotidesLRK53_RS03115 and LRK53_RS03120 overlap by 4 nucleotides LRK53_RS03100: LRK53_RS03100 - 3-isopropylmalate dehydrogenase, at 724,267 to 725,364 _RS03100 LRK53_RS03105: LRK53_RS03105 - 3-isopropylmalate dehydratase small subunit, at 725,361 to 726,005 _RS03105 LRK53_RS03110: LRK53_RS03110 - 3-isopropylmalate dehydratase large subunit, at 726,163 to 727,575 _RS03110 LRK53_RS03115: LRK53_RS03115 - branched-chain amino acid transaminase, at 727,572 to 728,573 _RS03115 LRK53_RS03120: LRK53_RS03120 - 2-isopropylmalate synthase, at 728,570 to 730,204 _RS03120 Position (kb) 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 725.353 kb on - strandat 725.370 kb on + strandat 725.482 kb on + strand, within LRK53_RS03105at 725.483 kb on - strand, within LRK53_RS03105at 725.483 kb on - strand, within LRK53_RS03105at 725.483 kb on - strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.728 kb on + strand, within LRK53_RS03105at 725.729 kb on - strand, within LRK53_RS03105at 725.729 kb on - strand, within LRK53_RS03105at 725.729 kb on - strand, within LRK53_RS03105at 726.155 kb on - strandat 726.185 kb on + strandat 726.186 kb on - strandat 726.186 kb on - strandat 726.186 kb on - strandat 726.186 kb on - strandat 726.186 kb on - strandat 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.740 kb on + strand, within LRK53_RS03110at 726.741 kb on - strand, within LRK53_RS03110at 726.950 kb on + strand, within LRK53_RS03110at 726.951 kb on - strand, within LRK53_RS03110at 726.951 kb on - strand, within LRK53_RS03110at 727.337 kb on + strand, within LRK53_RS03110at 727.337 kb on + strand, within LRK53_RS03110at 727.338 kb on - strand, within LRK53_RS03110at 727.493 kb on + strandat 727.493 kb on + strandat 727.493 kb on + strandat 727.494 kb on - strandat 727.494 kb on - strandat 727.494 kb on - strandat 727.494 kb on - strandat 727.684 kb on + strand, within LRK53_RS03115at 727.684 kb on + strand, within LRK53_RS03115at 727.697 kb on + strand, within LRK53_RS03115at 727.843 kb on + strand, within LRK53_RS03115at 727.843 kb on + strand, within LRK53_RS03115at 727.843 kb on + strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 728.047 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.362 kb on + strand, within LRK53_RS03115at 728.362 kb on + strand, within LRK53_RS03115at 728.363 kb on - strand, within LRK53_RS03115at 728.363 kb on - strand, within LRK53_RS03115at 728.363 kb on - strand, within LRK53_RS03115at 728.380 kb on + strand, within LRK53_RS03115at 728.380 kb on + strand, within LRK53_RS03115at 728.380 kb on + strand, within LRK53_RS03115at 728.381 kb on - strand, within LRK53_RS03115at 728.381 kb on - strand, within LRK53_RS03115at 728.432 kb on - strand, within LRK53_RS03115at 728.455 kb on + strand, within LRK53_RS03115at 728.456 kb on - strand, within LRK53_RS03115at 728.488 kb on + strandat 728.489 kb on - strandat 728.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM;
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725,353 - -0.2
725,370 + -1.3
725,482 + LRK53_RS03105 0.19 -0.4
725,483 - LRK53_RS03105 0.19 +0.7
725,483 - LRK53_RS03105 0.19 -1.9
725,483 - LRK53_RS03105 0.19 -1.8
725,572 + LRK53_RS03105 0.33 -0.4
725,572 + LRK53_RS03105 0.33 -0.2
725,572 + LRK53_RS03105 0.33 +0.8
725,572 + LRK53_RS03105 0.33 -2.6
725,572 + LRK53_RS03105 0.33 -1.0
725,572 + LRK53_RS03105 0.33 -2.6
725,572 + LRK53_RS03105 0.33 -0.7
725,572 + LRK53_RS03105 0.33 -0.5
725,572 + LRK53_RS03105 0.33 -2.2
725,572 + LRK53_RS03105 0.33 -0.4
725,572 + LRK53_RS03105 0.33 -2.4
725,572 + LRK53_RS03105 0.33 -1.4
725,572 + LRK53_RS03105 0.33 -2.6
725,572 + LRK53_RS03105 0.33 -1.2
725,573 - LRK53_RS03105 0.33 -1.5
725,573 - LRK53_RS03105 0.33 -1.1
725,573 - LRK53_RS03105 0.33 -0.5
725,573 - LRK53_RS03105 0.33 +1.7
725,573 - LRK53_RS03105 0.33 -1.3
725,573 - LRK53_RS03105 0.33 +2.2
725,573 - LRK53_RS03105 0.33 -0.7
725,573 - LRK53_RS03105 0.33 -0.9
725,573 - LRK53_RS03105 0.33 -2.0
725,573 - LRK53_RS03105 0.33 -2.8
725,573 - LRK53_RS03105 0.33 -0.4
725,573 - LRK53_RS03105 0.33 +1.4
725,573 - LRK53_RS03105 0.33 +0.8
725,573 - LRK53_RS03105 0.33 -0.3
725,573 - LRK53_RS03105 0.33 -0.7
725,573 - LRK53_RS03105 0.33 +0.7
725,573 - LRK53_RS03105 0.33 -1.1
725,573 - LRK53_RS03105 0.33 -1.3
725,573 - LRK53_RS03105 0.33 +0.6
725,573 - LRK53_RS03105 0.33 -1.4
725,573 - LRK53_RS03105 0.33 +0.4
725,573 - LRK53_RS03105 0.33 -0.4
725,573 - LRK53_RS03105 0.33 -1.4
725,728 + LRK53_RS03105 0.57 -1.5
725,729 - LRK53_RS03105 0.57 -0.2
725,729 - LRK53_RS03105 0.57 -1.6
725,729 - LRK53_RS03105 0.57 -1.1
726,155 - -1.5
726,185 + -0.7
726,186 - -0.6
726,186 - -0.1
726,186 - +0.2
726,186 - -0.4
726,186 - -1.1
726,605 + LRK53_RS03110 0.31 -1.1
726,605 + LRK53_RS03110 0.31 -0.5
726,605 + LRK53_RS03110 0.31 +0.4
726,605 + LRK53_RS03110 0.31 +1.0
726,605 + LRK53_RS03110 0.31 -0.0
726,606 - LRK53_RS03110 0.31 -1.4
726,606 - LRK53_RS03110 0.31 -0.1
726,606 - LRK53_RS03110 0.31 +2.9
726,606 - LRK53_RS03110 0.31 -1.8
726,606 - LRK53_RS03110 0.31 -0.8
726,606 - LRK53_RS03110 0.31 +0.3
726,606 - LRK53_RS03110 0.31 -0.7
726,606 - LRK53_RS03110 0.31 +0.6
726,606 - LRK53_RS03110 0.31 +0.8
726,689 + LRK53_RS03110 0.37 +0.2
726,689 + LRK53_RS03110 0.37 -2.4
726,689 + LRK53_RS03110 0.37 -1.4
726,689 + LRK53_RS03110 0.37 -0.9
726,689 + LRK53_RS03110 0.37 -1.1
726,689 + LRK53_RS03110 0.37 -2.1
726,689 + LRK53_RS03110 0.37 +1.3
726,689 + LRK53_RS03110 0.37 -2.5
726,690 - LRK53_RS03110 0.37 +0.6
726,690 - LRK53_RS03110 0.37 -1.5
726,690 - LRK53_RS03110 0.37 +1.3
726,690 - LRK53_RS03110 0.37 +0.5
726,690 - LRK53_RS03110 0.37 -1.3
726,690 - LRK53_RS03110 0.37 +0.3
726,690 - LRK53_RS03110 0.37 -0.5
726,690 - LRK53_RS03110 0.37 +0.1
726,740 + LRK53_RS03110 0.41 -1.3
726,741 - LRK53_RS03110 0.41 -0.9
726,950 + LRK53_RS03110 0.56 -1.8
726,951 - LRK53_RS03110 0.56 -0.7
726,951 - LRK53_RS03110 0.56 -1.3
727,337 + LRK53_RS03110 0.83 -0.4
727,337 + LRK53_RS03110 0.83 -2.5
727,338 - LRK53_RS03110 0.83 +0.9
727,493 + -2.9
727,493 + -1.4
727,493 + -0.2
727,494 - -1.9
727,494 - -0.8
727,494 - +1.3
727,494 - -0.7
727,684 + LRK53_RS03115 0.11 -1.3
727,684 + LRK53_RS03115 0.11 +0.1
727,697 + LRK53_RS03115 0.12 -0.2
727,843 + LRK53_RS03115 0.27 -0.4
727,843 + LRK53_RS03115 0.27 +0.1
727,843 + LRK53_RS03115 0.27 +0.6
727,844 - LRK53_RS03115 0.27 -2.3
727,844 - LRK53_RS03115 0.27 -2.1
727,844 - LRK53_RS03115 0.27 -1.9
727,844 - LRK53_RS03115 0.27 +0.1
728,047 + LRK53_RS03115 0.47 -0.9
728,092 + LRK53_RS03115 0.52 -1.4
728,092 + LRK53_RS03115 0.52 -1.1
728,092 + LRK53_RS03115 0.52 -0.2
728,092 + LRK53_RS03115 0.52 -2.4
728,092 + LRK53_RS03115 0.52 -1.9
728,092 + LRK53_RS03115 0.52 -0.7
728,093 - LRK53_RS03115 0.52 -1.3
728,093 - LRK53_RS03115 0.52 +0.1
728,093 - LRK53_RS03115 0.52 -1.5
728,093 - LRK53_RS03115 0.52 -0.5
728,093 - LRK53_RS03115 0.52 +0.2
728,194 + LRK53_RS03115 0.62 +0.3
728,194 + LRK53_RS03115 0.62 +0.6
728,194 + LRK53_RS03115 0.62 -2.3
728,194 + LRK53_RS03115 0.62 -1.9
728,195 - LRK53_RS03115 0.62 -2.2
728,195 - LRK53_RS03115 0.62 -1.6
728,195 - LRK53_RS03115 0.62 -0.5
728,195 - LRK53_RS03115 0.62 -1.0
728,296 + LRK53_RS03115 0.72 -2.2
728,296 + LRK53_RS03115 0.72 -1.4
728,296 + LRK53_RS03115 0.72 -1.7
728,296 + LRK53_RS03115 0.72 -1.4
728,296 + LRK53_RS03115 0.72 +0.1
728,296 + LRK53_RS03115 0.72 -2.9
728,296 + LRK53_RS03115 0.72 +1.2
728,297 - LRK53_RS03115 0.72 -0.5
728,297 - LRK53_RS03115 0.72 -1.2
728,297 - LRK53_RS03115 0.72 -0.1
728,297 - LRK53_RS03115 0.72 -2.6
728,297 - LRK53_RS03115 0.72 -0.9
728,297 - LRK53_RS03115 0.72 -1.9
728,362 + LRK53_RS03115 0.79 -0.2
728,362 + LRK53_RS03115 0.79 -0.2
728,363 - LRK53_RS03115 0.79 -1.5
728,363 - LRK53_RS03115 0.79 -1.6
728,363 - LRK53_RS03115 0.79 -1.0
728,380 + LRK53_RS03115 0.81 -0.5
728,380 + LRK53_RS03115 0.81 -0.8
728,380 + LRK53_RS03115 0.81 +1.5
728,381 - LRK53_RS03115 0.81 -0.8
728,381 - LRK53_RS03115 0.81 +0.9
728,432 - LRK53_RS03115 0.86 -2.5
728,455 + LRK53_RS03115 0.88 -0.8
728,456 - LRK53_RS03115 0.88 +0.3
728,488 + -0.4
728,489 - -0.7
728,489 - -1.8

Or see this region's nucleotide sequence