Experiment: biofilm; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01085 and LRK53_RS01090 are separated by 169 nucleotides LRK53_RS01090 and LRK53_RS01095 are separated by 105 nucleotides
LRK53_RS01085: LRK53_RS01085 - RNA polymerase sigma factor RpoD, at 270,550 to 272,424
_RS01085
LRK53_RS01090: LRK53_RS01090 - D-aminoacyl-tRNA deacylase, at 272,594 to 273,034
_RS01090
LRK53_RS01095: LRK53_RS01095 - lipid A biosynthesis acyltransferase, at 273,140 to 274,033
_RS01095
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 272.462 kb on - strand at 272.650 kb on + strand, within LRK53_RS01090 at 272.650 kb on + strand, within LRK53_RS01090 at 272.650 kb on + strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 272.651 kb on - strand, within LRK53_RS01090 at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.011 kb on + strand at 273.012 kb on - strand at 273.012 kb on - strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.092 kb on + strand at 273.093 kb on - strand at 273.093 kb on - strand at 273.093 kb on - strand at 273.093 kb on - strand at 273.127 kb on + strand at 273.127 kb on + strand at 273.128 kb on - strand at 273.128 kb on - strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.155 kb on + strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.156 kb on - strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.164 kb on + strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.165 kb on - strand at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.521 kb on + strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.522 kb on - strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.662 kb on + strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.663 kb on - strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.815 kb on + strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.816 kb on - strand, within LRK53_RS01095 at 273.965 kb on + strand at 273.965 kb on + strand at 273.966 kb on - strand at 273.966 kb on - strand at 273.976 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.977 kb on + strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 273.978 kb on - strand at 274.014 kb on - strand at 274.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; remove 272,462 - -2.0 272,650 + LRK53_RS01090 0.13 +0.5 272,650 + LRK53_RS01090 0.13 -0.6 272,650 + LRK53_RS01090 0.13 -0.2 272,651 - LRK53_RS01090 0.13 -0.4 272,651 - LRK53_RS01090 0.13 +0.9 272,651 - LRK53_RS01090 0.13 -1.4 272,651 - LRK53_RS01090 0.13 -0.4 272,651 - LRK53_RS01090 0.13 -0.5 272,651 - LRK53_RS01090 0.13 -2.6 272,651 - LRK53_RS01090 0.13 -1.1 272,651 - LRK53_RS01090 0.13 +0.6 273,011 + +1.8 273,011 + -0.7 273,011 + +0.4 273,011 + +0.2 273,011 + -2.5 273,011 + -1.4 273,012 - -2.3 273,012 - -0.4 273,092 + -0.3 273,092 + +0.1 273,092 + -0.1 273,092 + -1.2 273,093 - -0.2 273,093 - -0.5 273,093 - -1.5 273,093 - -0.5 273,127 + +0.8 273,127 + -2.1 273,128 - -1.7 273,128 - -0.7 273,155 + -0.3 273,155 + -1.4 273,155 + -0.1 273,155 + -0.6 273,155 + +0.1 273,155 + -2.1 273,155 + -1.3 273,155 + -1.3 273,155 + -1.6 273,155 + +0.4 273,155 + -0.8 273,155 + -1.3 273,155 + -0.9 273,155 + +1.6 273,155 + -0.4 273,155 + -1.5 273,155 + -1.4 273,155 + -0.8 273,155 + -1.3 273,155 + -0.8 273,155 + +0.1 273,155 + -1.4 273,155 + -0.9 273,155 + -0.2 273,155 + -0.4 273,156 - -0.1 273,156 - -0.7 273,156 - +1.0 273,156 - +1.3 273,156 - -0.8 273,156 - -1.7 273,156 - -0.5 273,156 - -0.3 273,156 - +0.1 273,156 - -0.4 273,156 - -0.1 273,156 - -2.2 273,156 - +0.5 273,156 - -0.9 273,156 - +0.3 273,156 - -1.1 273,164 + +1.2 273,164 + -0.5 273,164 + -0.3 273,164 + -1.5 273,164 + +0.3 273,164 + +0.3 273,164 + -1.4 273,164 + -0.8 273,164 + -1.4 273,164 + -1.2 273,164 + -0.3 273,164 + +0.0 273,164 + -0.9 273,165 - -0.9 273,165 - +1.4 273,165 - -0.5 273,165 - -0.5 273,165 - -0.1 273,165 - -0.5 273,165 - +1.6 273,165 - -0.7 273,521 + LRK53_RS01095 0.43 -1.4 273,521 + LRK53_RS01095 0.43 -0.5 273,521 + LRK53_RS01095 0.43 -0.8 273,521 + LRK53_RS01095 0.43 +1.3 273,521 + LRK53_RS01095 0.43 +1.1 273,521 + LRK53_RS01095 0.43 -1.1 273,521 + LRK53_RS01095 0.43 +1.2 273,522 - LRK53_RS01095 0.43 -0.4 273,522 - LRK53_RS01095 0.43 -0.1 273,522 - LRK53_RS01095 0.43 +0.3 273,522 - LRK53_RS01095 0.43 +0.8 273,522 - LRK53_RS01095 0.43 -0.3 273,522 - LRK53_RS01095 0.43 -0.9 273,662 + LRK53_RS01095 0.58 -0.6 273,662 + LRK53_RS01095 0.58 -1.8 273,662 + LRK53_RS01095 0.58 -1.1 273,662 + LRK53_RS01095 0.58 +0.3 273,662 + LRK53_RS01095 0.58 +1.3 273,662 + LRK53_RS01095 0.58 -1.5 273,662 + LRK53_RS01095 0.58 -0.8 273,662 + LRK53_RS01095 0.58 +1.6 273,662 + LRK53_RS01095 0.58 -1.1 273,662 + LRK53_RS01095 0.58 -0.4 273,663 - LRK53_RS01095 0.59 -1.1 273,663 - LRK53_RS01095 0.59 +0.7 273,663 - LRK53_RS01095 0.59 -0.9 273,663 - LRK53_RS01095 0.59 +0.3 273,663 - LRK53_RS01095 0.59 -2.8 273,663 - LRK53_RS01095 0.59 -0.5 273,663 - LRK53_RS01095 0.59 -1.4 273,663 - LRK53_RS01095 0.59 +0.5 273,815 + LRK53_RS01095 0.76 +1.1 273,815 + LRK53_RS01095 0.76 -0.8 273,815 + LRK53_RS01095 0.76 -0.4 273,815 + LRK53_RS01095 0.76 -0.1 273,815 + LRK53_RS01095 0.76 +1.0 273,815 + LRK53_RS01095 0.76 -0.5 273,815 + LRK53_RS01095 0.76 -0.5 273,815 + LRK53_RS01095 0.76 -0.5 273,815 + LRK53_RS01095 0.76 -0.4 273,815 + LRK53_RS01095 0.76 -2.0 273,815 + LRK53_RS01095 0.76 +0.6 273,816 - LRK53_RS01095 0.76 +2.1 273,816 - LRK53_RS01095 0.76 -2.6 273,816 - LRK53_RS01095 0.76 -0.3 273,816 - LRK53_RS01095 0.76 -0.9 273,816 - LRK53_RS01095 0.76 -0.4 273,816 - LRK53_RS01095 0.76 +0.1 273,816 - LRK53_RS01095 0.76 +0.4 273,816 - LRK53_RS01095 0.76 -0.2 273,816 - LRK53_RS01095 0.76 -1.3 273,965 + -0.6 273,965 + -1.0 273,966 - +0.5 273,966 - -1.3 273,976 + -2.1 273,977 + -1.4 273,977 + +0.3 273,977 + -0.8 273,977 + -0.7 273,977 + +0.9 273,977 + +1.0 273,977 + -1.2 273,977 + +0.3 273,977 + -1.2 273,977 + +0.1 273,977 + -0.8 273,977 + -0.8 273,977 + -0.7 273,977 + -1.4 273,977 + +0.3 273,977 + -0.4 273,977 + -0.9 273,977 + -0.7 273,977 + -1.1 273,977 + +0.6 273,977 + -1.4 273,977 + +0.9 273,977 + +0.8 273,977 + -0.6 273,977 + -0.4 273,977 + -0.7 273,977 + -0.3 273,977 + -0.1 273,977 + -0.9 273,978 - -0.3 273,978 - -0.2 273,978 - +1.3 273,978 - -2.8 273,978 - -2.2 273,978 - -0.2 273,978 - -0.2 273,978 - -1.1 273,978 - -0.4 273,978 - +0.7 273,978 - -1.8 273,978 - -1.9 273,978 - +0.2 273,978 - -0.7 273,978 - +0.5 273,978 - -0.9 273,978 - -0.2 273,978 - -0.9 273,978 - -2.1 273,978 - -1.6 273,978 - -1.3 273,978 - -0.7 273,978 - -2.2 274,014 - -0.6 274,014 - -0.4
Or see this region's nucleotide sequence